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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtaagagttttcctcttttctttattcggttgctggttgcacataagtcggaaagatacttaccattcctcgtgcttcttttcctgtacgacattgttagGTTGACCCTATGGTGATCCATTCTGCCTCTGATCCAAAACCTCGCACTGCACTCTGTGGTGATTATTTTTATAATTATTTCACACGCGGCATTGATATCT

Basic information

species Physcomitrella patens
transcript PP1S58_197V6.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S58_197V6.2 (Physcomitrella patens), 3'ss of exon 9
lower sequence: GLYMA01G37380.1 (Glycine max), 3'ss of exon 9
gtaagagttttcctcttttctttattcggttgctggttgcacataagtcggaaagatacttaccattcctcgtgcttcttttcctgtacgacattgt-tagGTTGACCCTATGGTGATCCATTCTGCCTCTGATCCAAAACCTCGCACTGCACTCTGTGGTGATTATTTTTATAATTATTTCACACGCGGCATTGATATCT
|||  | ||||       | | |||||  ||   |  |  |    |    |||  |   ||    ||  | |   |     || |    |  ||| | |||||||| |  ||||| || |||||||| || |||      || || ||  | |||||||||||||| |||||||||||||| || || ||  | || ||||
gtattaattttgtctaaatatatattcatttaaggtctaaattctaccttgaataagttttggt-ttgtttgaagtctgactcttaattgtaattctgtagGTTGATCAAATGGTTATTCATTCTGCTTCAGATTTTCGGCCACGGACAACTCTCTGTGGTGATTACTTTTATAATTATTTTACTCGTGGTCTGGACATCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208382909|gb|DC928334.1|DC928334
EST:     GATGTGTGGGCAGAGTTAGGTCGGCCATGTGGTATTCACCAGAAACAG                         GTTGACCCTATGGTGATCCATTCTGCCTCTGATCCAAAACCTCGCACTGCA
genomic: GATGTGTGGGCAGAGTTAGGTCGGCCATGTGGTATTCACCAGAAACAGgttagttctt ... acattgttagGTTGACCCTATGGTGATCCATTCTGCCTCTGATCCAAAACCTCGCACTGCA
EST: gi|67726513|gb|BJ976772.1|BJ976772
EST:     GATGTGTGGGCAGAGTTAGGTCGGCCATGTGGTATTCACCAGAAACAG                         GTTGACCCTATGGTGATCCATTCTGCCTNTGATCCAAAACCTCGCACTGCA
genomic: GATGTGTGGGCAGAGTTAGGTCGGCCATGTGGTATTCACCAGAAACAGgttagttctt ... acattgttagGTTGACCCTATGGTGATCCATTCTGCCTCTGATCCAAAACCTCGCACTGCA
EST: gi|6167306|gb|AW145570.1|AW145570
EST:     GATGTGTGGGCAGAGTTAGGTCGGCCATGTGGTATTCACCAGAAACAG                         GTTGACCCTATGGTGATCCATTCTGCCTCTGATCCAAAACCTCGCACTGCA
genomic: GATGTGTGGGCAGAGTTAGGTCGGCCATGTGGTATTCACCAGAAACAGgttagttctt ... acattgttagGTTGACCCTATGGTGATCCATTCTGCCTCTGATCCAAAACCTCGCACTGCA
EST: gi|37821349|gb|BJ579415.1|BJ579415
EST:     CACCAGAAACCAG                         GTTGACCCTATGGTGATCCATTCTGCNTNTGATCCAAAACCTCGCACTGC
genomic: CACCAGAAA-CAGgttagttctt ... acattgttagGTTGACCCTATGGTGATCCATTCTGCCTCTGATCCAAAACCTCGCACTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcggaaagatacttaccattcctcgtgcttcttttcctgtacgacattgttagGTTGACCCTATGGTGATCCATTCTGCCTCTGATCCAAAACCTCGCACTGCACTCTGTGGTGATTATTTTTATAATTATTTCACACGCGGCATTGATATCT
           tacttac  putative branch site (score: 1)
      aaagata  TA-rich tract