1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtagtgattactaactttttataacgttgttttcacccttagtcttccagaacatgtgtggaagttgagttctgctcagaatgttgcaggtagataatactgtagagggttattcatatcttttttaattgttatgtaatgagtatgctttgagctcacgaatttcatgttgggctgaacagCGGTTCAGAAATTCGAACTTGCAAGCTTTCTACGGTGGTACGTTACCGTGGAGCTTCATGATCCTGCATATGCGAAAAGATTTTATTCAATATATGAGAT
species | Physcomitrella patens |
transcript | PP1S58_188V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTTGAACGTTCTGACAAATCACGCCTTTCTTACTTTCTTGTCAAAAGAG CGGTTCAGAAATTCGAACTTGCAAGCTTTCTACGGTGGTACGTTACCGTGGEST: gi|208352040|gb|DC925849.1|DC925849
genomic: CTTTGAACGTTCTGACAAATCACGCCTTTCTTACTTTCTTGTCAAAAGAGgtagtgatta ... ggctgaacagCGGTTCAGAAATTCGAACTTGCAAGCTTTCTACGGTGGTACGTTACCGTGG
EST: CTTTGAACGTTCTGACAAATCACGCCTTTCTTACTTTCTTGTCAAAAGAG CGGTTCAGAAATTCGAACTTGCAAGCTTTCTACGGTGGTACGTTACCGTGGEST: gi|67574088|gb|BJ946912.1|BJ946912
genomic: CTTTGAACGTTCTGACAAATCACGCCTTTCTTACTTTCTTGTCAAAAGAGgtagtgatta ... ggctgaacagCGGTTCAGAAATTCGAACTTGCAAGCTTTCTACGGTGGTACGTTACCGTGG
EST: CTTTGAACGTTCTGACAAATCACGCCTTTCTTACTTTCTTGTCAAAAGAG CGGTTCAGAAATTCGAACTTGCAAGCTTTCTACGGTGGTACGTTACCGTGG
genomic: CTTTGAACGTTCTGACAAATCACGCCTTTCTTACTTTCTTGTCAAAAGAGgtagtgatta ... ggctgaacagCGGTTCAGAAATTCGAACTTGCAAGCTTTCTACGGTGGTACGTTACCGTGG
attgttatgtaatgagtatgctttgagctcacgaatttcatgttgggctgaacagCGGTTCAGAAATTCGAACTTGCAAGCTTTCTACGGTGGTACGTTACCGTGGAGCTTCATGATCCTGCATATGCGAAAAGATTTTATTCAATATATGAGAT
agctcac putative branch site (score: 3)
tatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgattactaactttttataacgttgttttcacccttagtcttccagaacatgtgtggaagttgagttctgctcagaatgttgcaggtagataatactgtagagggttattcatatcttttttaattgttatgtaatgagtatgctttgagctcacgaatttcatgttgggctgaacagCGGTTCAGAAATTCGAACTTGCAAGCTTTCTACGGTGGTACGTTACCGTGGAGCTTCATGATCCTGCATATGCGAAAAGATTTTATTCAATATATGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT