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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttgtcattctcattctttatgttaagttgtaggtacacatctttttgttttgtaattgaggttctgtgttattattgtgtatgtaagaatgtgattttatacattattttagttctagtatgcttaagtttataatcagctgtcctcaatcggtgttgtagAGCGTCATGGAATATGAAGAACACGAGAAACGGGCCTGGAGTGTAGATTTTTCACGAACTGACCCGACTATGCTTGTGTCAGGAAGTGATGACGGCAAG

Basic information

species Physcomitrella patens
transcript PP1S264_64V6.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S264_64V6.1 (Physcomitrella patens), 3'ss of exon 9
lower sequence: GRMZM2G126795_T01 (Zea mays), 3'ss of exon 9
gttagttgtcattctcattctttatgttaagttgtaggtacacatctttttgttttgtaattgaggttctgtgttattattgtgtatgtaagaatgtgattttatacattattttagttctagtatgcttaagtttataatcagctgtcctcaatcggtgttgtagAGCGTCATGGAATATGAAGAACACGAGAAACGGGCCTGGAGTGTAGATTTTTCACGAACTGACCCGACTATGCTTGTGTCAGGAAGTGATGACGGCAAG
                                                            |      ||| | |||   ||   | || ||     ||    | | |  |||| || ||| |     || | |  | |  |    |||      | |   |  ||||| || |||||||||||||| || |||||| | || |||||||| |||||||| ||||| || ||  | ||||| || || || ||||| ||  |||||
-----------------------------------------------------------gtatccactctattttacagttcattctgcaa-----tggccat-tgctgtattataattcaaa----ctgaggcatgtggttt-ttgtgtattgt-gacatgctagAGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAG

upper sequence: PP1S264_64V6.1 (Physcomitrella patens), 3'ss of exon 9
lower sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 8
gttagttgtcattctcattctttatgttaagttgtaggtacacatctttttgttttgtaattgaggttctgtgt-tattattgtgtatgtaagaatgtgattttatacattattttagttctagtatgcttaagtttataatcagctgtcctcaatcggtgttgtagAGCGTCATGGAATATGAAGAACACGAGAAACGGGCCTGGAGTGTAGATTTTTCACGAACTGACCCGACTATGCTTGTGTCAGGAAGTGATGACGGCAAG
                    |  ||||| | ||  |  |     ||  |||||| |   ||      | || || | ||| |   |   ||    | | || | ||    |   |||  | |  ||    | | ||  | ||  ||| || |   ||  | ||| ||||  | |||||||||||||| || || || || || |||||||| ||||||||| |||| |||||  |||||||||| || || || |||||| | |||
-------------------gtaaatgttgaatt-caaatg---gtcagtttgttcttgtatcagctctttgggtatcttaattcattaatatttttttaatgtcatgtgcttgcttaaattttctacagattatttactcat-ggctatcatttttcctt-ttgcagAGTTTAATGGAATATGAAGAGCATGAAAAGCGTGCATGGAGTGTTGATTTTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAG

upper sequence: PP1S264_64V6.1 (Physcomitrella patens), 3'ss of exon 9
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 8
gttagttgtcattctcattctttatgttaagttgtaggtacacatctttttgttttgtaattgaggttctgtgttattattgtgtatgtaagaatgtgattttatacattattttagttctagtatgcttaagtttataatcagctgtcctcaatcggtgttgtagAGCGTCATGGAATATGAAGAACACGAGAAACGGGCCTGGAGTGTAGATTTTTCACGAACTGACCCGACTATGCTTGTGTCAGGAAGTGATGACGGCAAG
                                                |  ||  | ||    | ||       ||  || |    | |||||   | || | ||  |||        |  ||  |  || | ||| ||      |||    || | | |  | ||||  | ||||| |||||||| ||||| ||||| ||||||||||| || ||||||||||| || ||  | |||||||| || || ||||| ||| |||||
-----------------------------------------------gtgagtactttacccaaagtatc----taacatcgcacctataagatattcatctcatgaatt-------ctgcagcgtatttgaattttta------tgt----aaactgag--gcagAGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAG

upper sequence: PP1S264_64V6.1 (Physcomitrella patens), 3'ss of exon 9
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 8
gttagttgtcattctcattctttatgttaagttgtaggtacacatctttttgttttgtaattgaggttctgtgtt-attattgtgtatgtaagaatgtgattttatacattattttagttctagtatgcttaagtttataatcagctgtcctcaatcggtgttgtagAGCGTCATGGAATATGAAGAACACGAGAAACGGGCCTGGAGTGTAGATTTTTCACGAACTGACCCGACTATGCTTGTGTCAGGAAGTGATGACGGCAAG
                                                  |  |||| |    |  ||||| | |    | ||  |||      || ||   || || ||   | ||       |||   ||  | |   |  |  |||  |  |||        |||| || |||||||||||||| || || |||||||| |||||||| ||||||||||| || || ||  | | |||||| || || ||||||||  | |||
------------------------------------------------ggtcctttgaatgaaaaattctgggctcgccactgactata----gatttgtccttgtatatatatata-------tatatatatatatgctaataaatgttttttatc--------agAGTGTGATGGAATATGAAGAGCATGAAAAACGGGCATGGAGTGTTGATTTTTCACGCACAGAACCCTCAAGGCTTGTATCTGGCAGTGATGATTGTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttagttctagtatgcttaagtttataatcagctgtcctcaatcggtgttgtagAGCGTCATGGAATATGAAGAACACGAGAAACGGGCCTGGAGTGTAGATTTTTCACGAACTGACCCGACTATGCTTGTGTCAGGAAGTGATGACGGCAAG
                 ttaagtttataatca  TA-rich tract