1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgtttctattcccttatgttgcaagctggttacaaagcagttctttcacgatgtacggattttctcaaattgatccaaattcgttgagtcatacatgtcgagcttagttgtgtgatttctgatttatgtcgtatttcagGCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGCAGTACTTGAGTCAAGGATCTTCCATATTCAA
species | Physcomitrella patens |
transcript | PP1S165_107V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGCTTNTGCGGTATGACCATCAAGAAAGGCTTACTGCCAGGGAAGCTANG GCTCATCCNTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGCEST: gi|162271756|gb|FC448889.1|FC448889
genomic: AGCTTCTGCGGTATGACCATCAAGAAAGGCTTACTGCCAGGGAAGCTATGgtatgtttct ... cgtatttcagGCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGC
EST: AGCTTCTGCGGTATGACCATCAAGAAAGGCTTACTGCCAGGGAAGCTATG GCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGCEST: gi|162240845|gb|FC417516.1|FC417516
genomic: AGCTTCTGCGGTATGACCATCAAGAAAGGCTTACTGCCAGGGAAGCTATGgtatgtttct ... cgtatttcagGCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGC
EST: AGCTTCTGCGGTATGACCATCAAGAAAGGCTTACTGCCAGGGAAGCTATG GCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGCEST: gi|162255256|gb|FC431566.1|FC431566
genomic: AGCTTCTGCGGTATGACCATCAAGAAAGGCTTACTGCCAGGGAAGCTATGgtatgtttct ... cgtatttcagGCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGC
EST: AGCTTCTGCGGTATGACCATCAAGAAAGGCTTACTGCCAGGGAAGCTATG GCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGCEST: gi|37834022|gb|BJ592034.1|BJ592034
genomic: AGCTTCTGCGGTATGACCATCAAGAAAGGCTTACTGCCAGGGAAGCTATGgtatgtttct ... cgtatttcagGCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGC
EST: AGCTTCTGCGGTATGACCATCAAGAAAGGCTTACTGCCAGGGAAGCTATG GCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGCEST: gi|37829629|gb|BJ587641.1|BJ587641
genomic: AGCTTCTGCGGTATGACCATCAAGAAAGGCTTACTGCCAGGGAAGCTATGgtatgtttct ... cgtatttcagGCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGC
EST: AGCTTCTGCGGTATGACCATCAAGAAAGGCTTACTGCCAGGGAAGCTATG GCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGCEST: gi|162240846|gb|FC417517.1|FC417517
genomic: AGCTTCTGCGGTATGACCATCAAGAAAGGCTTACTGCCAGGGAAGCTATGgtatgtttct ... cgtatttcagGCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGC
EST: AGCTTCTGCGGTATGACCATCAAGAAAGGCTTACTGCCAGGGAAGCTATG GCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGC
genomic: AGCTTCTGCGGTATGACCATCAAGAAAGGCTTACTGCCAGGGAAGCTATGgtatgtttct ... cgtatttcagGCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGC
tgagtcatacatgtcgagcttagttgtgtgatttctgatttatgtcgtatttcagGCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGCAGTACTTGAGTCAAGGATCTTCCATATTCAA
ttctgat putative branch site (score: 3)
tgatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttctattcccttatgttgcaagctggttacaaagcagttctttcacgatgtacggattttctcaaattgatccaaattcgttgagtcatacatgtcgagcttagttgtgtgatttctgatttatgtcgtatttcagGCTCATCCCTACTTCTATCCTGTTCGTTCCATGGAAGCAAGTAACCGTCGCAGTACTTGAGTCAAGGATCTTCCATATTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG