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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcaaaacttcatactgattaaatagctcctttgtgatttttggaaccttttgcctaacctgacaaaactaaacaatggagctgccacacggtaattgcagATCAACACAGACGATGGATCACTCATTCAAGTGATTGCTTCAGATCCTAGAAGCGATTTAATGCCCTTCAAATTTGACCCCTCAAAGGTGTTGTTCATGG

Basic information

species Physcomitrella patens
transcript PP1S9_317V6.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162242963|gb|FC416472.1|FC416472
EST:     ACATCATGTCGTCAGTTGATTCTCCGACGACACGCTTACTCTTG                         ATCAACACAGACGATGGATCACTCATTCAAGTGATTGCTTCAGATCCTAGA
genomic: ACATCATGTCGTCAGTTGATTCTCCGACGACACGCTTACTCTTGgtttgtacca ... gtaattgcagATCAACACAGACGATGGATCACTCATTCAAGTGATTGCTTCAGATCCTAGA
EST: gi|162160171|gb|FC337068.1|FC337068
EST:     CATGTACATCATGTCGTCAGTTGATTCTCCGACGACACGCTTACTCTTTG                         ATCA-CACAGACGATGGATCACTCATTTCA-GTGATTGCTT
genomic: CATGTACATCATGTCGTCAGTTGATTCTCCGACGACACGCTTACTCTT-Ggtttgtacca ... gtaattgcagATCAACACAGACGATGGATCACTCATT-CAAGTGATTGCTT
EST: gi|162252662|gb|FC428699.1|FC428699
EST:     ACATGTACATCATGTCGTCAGTTGATTCTTCGACGACACGCTTACTCTTG                         ATCAACACAGACGATGGATCACTCATTCAAGTGATTGCTTCAGATCCTAGA
genomic: ACATGTACATCATGTCGTCAGTTGATTCTCCGACGACACGCTTACTCTTGgtttgtacca ... gtaattgcagATCAACACAGACGATGGATCACTCATTCAAGTGATTGCTTCAGATCCTAGA
EST: gi|162178385|gb|FC355207.1|FC355207
EST:     ACATGTACATCATGTCGTCAGTTGATTCTCCGACGACACGCTTACTCTTG                         ATCAACACAGACGATGGATCACTCATTCAAGTGATTGCTTCAGATCCTAGA
genomic: ACATGTACATCATGTCGTCAGTTGATTCTCCGACGACACGCTTACTCTTGgtttgtacca ... gtaattgcagATCAACACAGACGATGGATCACTCATTCAAGTGATTGCTTCAGATCCTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttttgcctaacctgacaaaactaaacaatggagctgccacacggtaattgcagATCAACACAGACGATGGATCACTCATTCAAGTGATTGCTTCAGATCCTAGAAGCGATTTAATGCCCTTCAAATTTGACCCCTCAAAGGTGTTGTTCATGG
                    aactaaa  putative branch site (score: 2)
                  aaaactaaa  TA-rich tract