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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttattagtaactggttttacattttattacgagaatgtttaggattttgggttgtcacaatctagattattgattgaggctttgctgtttgtatccagGGGTCGTCTAAACTGACAACAGGAGAGGAATGGGATCAATCCAAAAGTTCCACTGTTGACTTGTCAAAAATCACCTCT

Basic information

species Physcomitrella patens
transcript PP1S9_314V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162171277|gb|FC347215.1|FC347215
EST:     GAAATGGCAAGTCGATTGATTGCAACTAAG                         GGGTCGTCTAAACTGACAACAGGAGAGGAATGGGATCAATCCAAAAGTTCC
genomic: GAAATGGCAAGTCGATTGATTGCAACTAAGgtgtgcgcat ... ttgtatccagGGGTCGTCTAAACTGACAACAGGAGAGGAATGGGATCAATCCAAAAGTTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgggttgtcacaatctagattattgattgaggctttgctgtttgtatccagGGGTCGTCTAAACTGACAACAGGAGAGGAATGGGATCAATCCAAAAGTTCCACTGTTGACTTGTCAAAAATCACCTCT
                        tattgat  putative branch site (score: 3)
                      attattgatt  TA-rich tract