1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgtgtgtatgtgctttactcgttttaatttcgcgacttgtttctttgctttttcaccgataatatcattccagtctttacttggaagttagtgaatgtactttatctcaagtgactcacaggatttggaacttcttagcaactgtttacgaacatgttataattgatttatctgatttctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAATCTAAGAAACTGCTGTCTAGTTTCTAGTTGCTCACCAGAAAACTTCGAT
species | Physcomitrella patens |
transcript | PP1S795_4V6.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|208368245|gb|DC951511.1|DC951511
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|67721306|gb|BJ971565.1|BJ971565
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|208358641|gb|DC949976.1|DC949976
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|67696742|gb|BJ956975.1|BJ956975
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|208396541|gb|DC915853.1|DC915853
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|162221477|gb|FC397286.1|FC397286
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|67720059|gb|BJ970318.1|BJ970318
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|208362683|gb|DC947174.1|DC947174
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|162200943|gb|FC377346.1|FC377346
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|67695640|gb|BJ955873.1|BJ955873
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|208367556|gb|DC951532.1|DC951532
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|67698195|gb|BJ958428.1|BJ958428
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTNGCTCTAAAAAEST: gi|18334153|gb|BJ166169.1|BJ166169
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|162194335|gb|FC368518.1|FC368518
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|67572272|gb|BJ945096.1|BJ945096
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|37830194|gb|BJ588206.1|BJ588206
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|18335952|gb|BJ167973.1|BJ167973
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAAEST: gi|37823009|gb|BJ581075.1|BJ581075
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
EST: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAG GTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
genomic: TTCTCGTCTATCGCTTCAAGTTTTATTGCAGATCTACAGGATCGCATCAGgtgtgtgtat ... ctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAA
cttagcaactgtttacgaacatgttataattgatttatctgatttctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAATCTAAGAAACTGCTGTCTAGTTTCTAGTTGCTCACCAGAAAACTTCGAT
atctgat putative branch site (score: 4)
tctgatttcttttt CT-rich tract
ttataattgatttatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgtatgtgctttactcgttttaatttcgcgacttgtttctttgctttttcaccgataatatcattccagtctttacttggaagttagtgaatgtactttatctcaagtgactcacaggatttggaacttcttagcaactgtttacgaacatgttataattgatttatctgatttctttttgcagGTAGATAGCATTTAATTCTTGCTTCGAGGGTTGCATGCTTTGCTCTAAAAATCTAAGAAACTGCTGTCTAGTTTCTAGTTGCTCACCAGAAAACTTCGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA