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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtaatttgatttaataaatgagttgtattaggctgagcttattagaattaaaaattgaattctaacctgatttgtgaacctacagATACATGATATCGTCAAACATTGGTGAAGTGGCATCAATATTTATGACAGCAGCATTAGGCATGCCGGAAGGATTAGTACCAGTTCAACTTCTTTGGGTA

Basic information

species Physcomitrella patens
transcript PP1S78_99V6.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S78_99V6.2 (Physcomitrella patens), 3'ss of exon 8
lower sequence: LOC_Os05g02940.1 (Oryza sativa), 3'ss of exon 2
------gtgggtaatttgatttaataaatga--gttgtattag--gctgagcttattagaattaaaaattgaattctaacctgatttgtgaac--ctacagATACATGATATCGTCAAACATTGGTGAAGTGGCATCAATATTTATGACAGCAGCATTAGGCATGCCGGAAGGATTAGTACCAGTTCAACTTCTTTGGGTA
       ||  | || |   ||   |  | |  |||||   ||     | | || || |   |       | |||||| |    ||| |  ||  || |||||||||||| || ||||||||||||||||| || ||||| ||  | ||  | ||  | || || || || || ||  |||| ||||||||||| ||||||
aaaacattgtttcatctacatttgcacctcatagttgtgcaagttatcgtgtttttttgt-ctgttctgaggattctagctgtctttcttcactgctgcagATACATGATTTCCTCAAACATTGGTGAAGTTGCGTCAATTTTCCTAACTTCTGCTCTGGGTATTCCTGAGGGGTTGATACCGGTTCAACTTCTATGGGTA

upper sequence: PP1S78_99V6.2 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GRMZM2G056014_T01 (Zea mays), 3'ss of exon 6
---------------------gtgggtaatttgatttaataa-atgagttgtattaggctgagcttattagaattaaaaattgaattctaacctgatttgtgaacctacagATACATGATATCGTCAAACATTGGTGAAGTGGCATCAATATTTATGACAGCAGCATTAGGCATGCCGGAAGGATTAGTACCAGTTCAACTTCTTTGGGTA
                      |   |  |   | ||  ||  |   ||  | || | |        ||      |    |    | |    ||   | |    ||  |||||||||||| |||||||||||||||||||| || || |||||  | ||  | ||  | ||||| || || || ||  | || || |||||||| ||||| 
gtctgtgctgagcttgctttgattattgttcacactttgtagtactcgtacttttcgcccccttcccttgtgggcattcttgacgtccctgtcttcctcggctgcc-gcagATACATGATTTCGTCAAACATTGGTGAAGTCGCTTCTATATTCCTAACTTCCGCCCTGGGCATTCCTGAGGGTTTGATTCCCGTCCAACTTCTATGGGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctgagcttattagaattaaaaattgaattctaacctgatttgtgaacctacagATACATGATATCGTCAAACATTGGTGAAGTGGCATCAATATTTATGACAGCAGCATTAGGCATGCCGGAAGGATTAGTACCAGTTCAACTTCTTTGGGTA
        ttattagaattaaaaa  TA-rich tract