1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatttcctctttccatttacgcatatcattgcaggaaacatgatcggcttcgatgtctggatggctaattagtgttcttcagtttaattagttgtgacgactttttatcaagtctcattgagccacatgagaaacatgagtgacttaccagtgttcgaggattcatttgtcgtcggatggtacaccagGGTTTCGCCAGTGGGAGCCTGGATGACGATGCTAGTTCCGTGAGGAAGTTCGTTGCCCGTGGTATGGAGGTTTTCGTGGCACAATCCTACAGCAAGAATC
species | Physcomitrella patens |
transcript | PP1S540_7V6.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCTTTGATGTAGCTTACCAG GGTTTCGCCAGTGGGAGCCTGGATGACGATGCTAGTTTCCGTGAGGAAGTTEST: gi|162217709|gb|FC393801.1|FC393801
genomic: TCTTTGATGTAGCTTACCAGgtaatttcct ... ggtacaccagGGTTTCGCCAGTGGGAGCCTGGATGACGATGCTAG-TTCCGTGAGGAAGTT
EST: ATCTTATTCAGCAAAAGAACCATATGGCATTCTTTGATGTAGCTTACCAG GGTTTCGCCAGTGGGAGCCTGGATGACGATGCTAGTTCCGTGAGGAAGTTCEST: gi|162172938|gb|FC348943.1|FC348943
genomic: ATCTTATTCAGCAAAAGAACCATATGGCATTCTTTGATGTAGCTTACCAGgtaatttcct ... ggtacaccagGGTTTCGCCAGTGGGAGCCTGGATGACGATGCTAGTTCCGTGAGGAAGTTC
EST: ATCTTATTCAGCAAAAGAACCATATGGCATTCTTTGATGTAGCTTACCAG GGTTTCGCCAGTGGGAGCCTGGATGACGATGCTAGTTCCGTGAGGAAGTTCEST: gi|208366815|gb|DC940129.1|DC940129
genomic: ATCTTATTCAGCAAAAGAACCATATGGCATTCTTTGATGTAGCTTACCAGgtaatttcct ... ggtacaccagGGTTTCGCCAGTGGGAGCCTGGATGACGATGCTAGTTCCGTGAGGAAGTTC
EST: ATCTTATTCAGCAAAAGAACCATATGGCATTCTTTGATGTAGCTTACCAG GGTTTCGCCAGTGGGAGCCTGGATGACGATGCTAGTTCCGTGAGGAAGTTCEST: gi|162196657|gb|FC373803.1|FC373803
genomic: ATCTTATTCAGCAAAAGAACCATATGGCATTCTTTGATGTAGCTTACCAGgtaatttcct ... ggtacaccagGGTTTCGCCAGTGGGAGCCTGGATGACGATGCTAGTTCCGTGAGGAAGTTC
EST: ATCTTATTCAGCAAAAGAACCATATGGCATTCTTTGATGTAGCTTACCAG GGTTTCGCCAGTGGGAGCCTGGATGACGATGCTAGTTCCGTGAGGAAGTTC
genomic: ATCTTATTCAGCAAAAGAACCATATGGCATTCTTTGATGTAGCTTACCAGgtaatttcct ... ggtacaccagGGTTTCGCCAGTGGGAGCCTGGATGACGATGCTAGTTCCGTGAGGAAGTTC
acatgagtgacttaccagtgttcgaggattcatttgtcgtcggatggtacaccagGGTTTCGCCAGTGGGAGCCTGGATGACGATGCTAGTTCCGTGAGGAAGTTCGTTGCCCGTGGTATGGAGGTTTTCGTGGCACAATCCTACAGCAAGAATC
gacttac putative branch site (score: 23)
attcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcctctttccatttacgcatatcattgcaggaaacatgatcggcttcgatgtctggatggctaattagtgttcttcagtttaattagttgtgacgactttttatcaagtctcattgagccacatgagaaacatgagtgacttaccagtgttcgaggattcatttgtcgtcggatggtacaccagGGTTTCGCCAGTGGGAGCCTGGATGACGATGCTAGTTCCGTGAGGAAGTTCGTTGCCCGTGGTATGGAGGTTTTCGTGGCACAATCCTACAGCAAGAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA