1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttggcacccactattttcaatccctatgttcatagttgtgacacgttccaagttgttggatactcgtggaagccttttgtaactgttctttttaattttgaattcatgagtggacagttttggtttttggtcgagtctcaaggctttgtttctgtcttacgagttgtatatgtggcgcctggatgtcttttcagTTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAAATCTGGTCAAGAATAGGCGCGAAAGTCAATCCTTTGATTCATCGCTTTG
species | Physcomitrella patens |
transcript | PP1S42_16V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAG TTATTGAAGCTTTACTATAGAGCCCCAAACACTTCTTTGTATCATCATCAAEST: gi|162231291|gb|FC406532.1|FC406532
genomic: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAGgttggcaccc ... gtcttttcagTTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAA
EST: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAG TTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAAEST: gi|162237827|gb|FC412480.1|FC412480
genomic: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAGgttggcaccc ... gtcttttcagTTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAA
EST: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAG TTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAAEST: gi|37847707|gb|BJ605715.1|BJ605715
genomic: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAGgttggcaccc ... gtcttttcagTTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAA
EST: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAG TTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAAEST: gi|18336481|gb|BJ168503.1|BJ168503
genomic: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAGgttggcaccc ... gtcttttcagTTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAA
EST: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAG TTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAAEST: gi|162154890|gb|FC331932.1|FC331932
genomic: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAGgttggcaccc ... gtcttttcagTTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAA
EST: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAG TTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAAEST: gi|37836287|gb|BJ594295.1|BJ594295
genomic: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAGgttggcaccc ... gtcttttcagTTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAA
EST: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAG TTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAAEST: gi|208371600|gb|DC952242.1|DC952242
genomic: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAGgttggcaccc ... gtcttttcagTTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAA
EST: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAG TTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAAEST: gi|208399430|gb|DC924860.1|DC924860
genomic: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAGgttggcaccc ... gtcttttcagTTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAA
EST: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAG TTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAAEST: gi|37835310|gb|BJ593322.1|BJ593322
genomic: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAGgttggcaccc ... gtcttttcagTTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAA
EST: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAG TTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAAEST: gi|162154889|gb|FC331931.1|FC331931
genomic: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAGgttggcaccc ... gtcttttcagTTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAA
EST: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAG TTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAA
genomic: GCCTCAACGTAATATTGTTCAAGCGTTGATCTACTGGCAGgttggcaccc ... gtcttttcagTTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAA
aaggctttgtttctgtcttacgagttgtatatgtggcgcctggatgtcttttcagTTATTGAAGCTCTACTATAGAGCACCAAACACTTCTTTGTATCATCATCAAATCTGGTCAAGAATAGGCGCGAAAGTCAATCCTTTGATTCATCGCTTTG
gtcttac putative branch site (score: 8)
tgtcttttc putative PPT
ttgtatat TA-rich tract