1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgaccattgttccctttccatattcatttgcagtttgcatcaacaaatagttgccagatgccgatgaagaagtctgattttattcgtgacttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCCTAAAGCGGACTAAAGCAATTATCTGGTGTTCTGACTTAAAGTTGTGCCT
species | Physcomitrella patens |
transcript | PP1S426_34V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCCEST: gi|208369961|gb|DC948084.1|DC948084
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCC
EST: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCCEST: gi|162217444|gb|FC393120.1|FC393120
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCC
EST: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCCEST: gi|18335121|gb|BJ167139.1|BJ167139
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCC
EST: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCCEST: gi|162160225|gb|FC337122.1|FC337122
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCC
EST: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCCEST: gi|208347818|gb|DC917567.1|DC917567
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCC
EST: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCCEST: gi|100447366|gb|CJ971665.1|CJ971665
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCC
EST: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGANAATGTGGTGGAGACNANCATGACTGGAAGGAGATGTTCEST: gi|208367118|gb|DC947824.1|DC947824
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGA-GGAGATGTTC
EST: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCCEST: gi|7582943|gb|AW699107.1|AW699107
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCC
EST: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCCEST: gi|162236819|gb|FC412562.1|FC412562
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCC
EST: GTAATTACTGCGCTCTACATCCTCCANACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTNGGAG-AGATGTTCEST: gi|162217443|gb|FC393119.1|FC393119
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACT-GGAGGAGATGTTC
EST: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCCEST: gi|208360526|gb|DC950072.1|DC950072
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCC
EST: GTAATCACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCCEST: gi|19790032|gb|BQ041658.1|BQ041658
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCC
EST: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCCEST: gi|37846197|gb|BJ604205.1|BJ604205
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCC
EST: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCCEST: gi|208378639|gb|DC903670.1|DC903670
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCC
EST: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGAEST: gi|208374026|gb|DC944759.1|DC944759
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGA
EST: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAG ATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCC
genomic: GTAATTACTGCGCTCTACATCCTCCAAACATCGAAGGACAAGTTAGCCAGgtttgaccat ... acttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCC
caaatagttgccagatgccgatgaagaagtctgattttattcgtgacttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCCTAAAGCGGACTAAAGCAATTATCTGGTGTTCTGACTTAAAGTTGTGCCT
gtctgat putative branch site (score: 8)
tgattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaccattgttccctttccatattcatttgcagtttgcatcaacaaatagttgccagatgccgatgaagaagtctgattttattcgtgacttatgcagATTTTTGAAGGAGAATGTGGTGGAGACGAGCATGACTGGAGGAGATGTTCCTAAAGCGGACTAAAGCAATTATCTGGTGTTCTGACTTAAAGTTGTGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA