1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatgtttatttctgtcggctgtcttgcattcacttccgggttctgacttagaatgtttgctcgcaaaccccttatttcggtttctgtcgcacgtgcacagGGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCGTTGGAACTAGGCTAT
species | Physcomitrella patens |
transcript | PP1S425_16V6.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAA GGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCGEST: gi|162186159|gb|FC361363.1|FC361363
genomic: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAAgtaagtctat ... acgtgcacagGGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCG
EST: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAA GGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCGEST: gi|162265881|gb|FC442884.1|FC442884
genomic: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAAgtaagtctat ... acgtgcacagGGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCG
EST: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAA GGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCGEST: gi|37829212|gb|BJ587224.1|BJ587224
genomic: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAAgtaagtctat ... acgtgcacagGGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCG
EST: TGAAGAGCCCGACAAGGAACCTTCCCCAAGGGATGCGCTTTCGTCTAGAA GGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCGEST: gi|37835343|gb|BJ593355.1|BJ593355
genomic: TGAAGAGCCCGACAAGGAACCTTCCCCAA-GGATGCGCTTTCGTCTAGAAgtaagtctat ... acgtgcacagGGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCG
EST: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAA GGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCGEST: gi|208367233|gb|DC951221.1|DC951221
genomic: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAAgtaagtctat ... acgtgcacagGGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCG
EST: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAA GGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCGEST: gi|162173550|gb|FC350124.1|FC350124
genomic: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAAgtaagtctat ... acgtgcacagGGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCG
EST: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAA GGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCGEST: gi|208346039|gb|DC921284.1|DC921284
genomic: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAAgtaagtctat ... acgtgcacagGGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCG
EST: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAA GGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCGEST: gi|37832494|gb|BJ590506.1|BJ590506
genomic: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAAgtaagtctat ... acgtgcacagGGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCG
EST: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAA GGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCGEST: gi|208364864|gb|DC943682.1|DC943682
genomic: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAAgtaagtctat ... acgtgcacagGGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCG
EST: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAA GGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCGEST: gi|162173551|gb|FC350125.1|FC350125
genomic: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAAgtaagtctat ... acgtgcacagGGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCG
EST: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAA GGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCGEST: gi|208385034|gb|DC919714.1|DC919714
genomic: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAAgtaagtctat ... acgtgcacagGGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCG
EST: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAA GGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCG
genomic: ATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCTTTCGTCTAGAAgtaagtctat ... acgtgcacagGGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCG
acttagaatgtttgctcgcaaaccccttatttcggtttctgtcgcacgtgcacagGGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCGTTGGAACTAGGCTAT
ttctgac putative branch site (score: 2)
ttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgtttatttctgtcggctgtcttgcattcacttccgggttctgacttagaatgtttgctcgcaaaccccttatttcggtttctgtcgcacgtgcacagGGATCGGAGCAAGAAATTGGAGAGGTTGCCCCTGATCATGACTTTGGAGCGTTGGAACTAGGCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG