1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...atctgatcattcatcattagagaatgtgacattttgtacgttttctgtttcgttttctcaagggaagtgacaatgggtaaatacttgccgtgttgggtagGAAGGGAGCACCAACAACGCCACTGGTGACCTTGGCTACGACTAAAGTTATTGCTGAGGTTTTGGAGCGAAATAAACTACCTGGTGGCATTTTCACCTGT
species | Physcomitrella patens |
transcript | PP1S237_29V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATGGAATGCATGTATCGCTCTTGTGTGTGGCAACTGCGTTGTATG GAAGGGAGCACCAACAACGCCACTGGTGACCTTGGCTACGACTAAAGTTATEST: gi|162171946|gb|FC348524.1|FC348524
genomic: GATGGAATGCATGTATCGCTCTTGTGTGTGGCAACTGCGTTGTATGgtgagacctc ... tgttgggtagGAAGGGAGCACCAACAACGCCACTGGTGACCTTGGCTACGACTAAAGTTAT
EST: GATGGAATGCATGTATCGCTCTTGTGTGTGGCAACTGCGTTGTATG GAAGGGAGCACCAACAACGCCACTGGTGACCTTGGCTACGACTAAAGTTATEST: gi|162153244|gb|FC329026.1|FC329026
genomic: GATGGAATGCATGTATCGCTCTTGTGTGTGGCAACTGCGTTGTATGgtgagacctc ... tgttgggtagGAAGGGAGCACCAACAACGCCACTGGTGACCTTGGCTACGACTAAAGTTAT
EST: GATGGAATGCATGTATCGCTCTTGTGTGTGGCAACTGCGTTGTATG GAAGGGAGCACCAACAACGCCACTGGTGACCTTGGCTACGACTAAAGTTATEST: gi|162180807|gb|FC358308.1|FC358308
genomic: GATGGAATGCATGTATCGCTCTTGTGTGTGGCAACTGCGTTGTATGgtgagacctc ... tgttgggtagGAAGGGAGCACCAACAACGCCACTGGTGACCTTGGCTACGACTAAAGTTAT
EST: GATGGAATGCATGTATCGCTCTTGTGTGTGGCAACTGCGTTGTATG GAAGGGAGCACCAACAACGCCACTGGTGACCTTGGCTACGACTAAAGTTATEST: gi|162268956|gb|FC445760.1|FC445760
genomic: GATGGAATGCATGTATCGCTCTTGTGTGTGGCAACTGCGTTGTATGgtgagacctc ... tgttgggtagGAAGGGAGCACCAACAACGCCACTGGTGACCTTGGCTACGACTAAAGTTAT
EST: GATGGAATGCATGTATCGCTCTTGTGTGTGGCAACTGCGTTGTATG GAAGGGAGCACCAACAACGCCACTGGTGACCTTGGCTACGACTAAAGTTATEST: gi|162153739|gb|FC329142.1|FC329142
genomic: GATGGAATGCATGTATCGCTCTTGTGTGTGGCAACTGCGTTGTATGgtgagacctc ... tgttgggtagGAAGGGAGCACCAACAACGCCACTGGTGACCTTGGCTACGACTAAAGTTAT
EST: GATGGAATGCATGTATCGCTCTTGTGTGTGGCAACTGCGTTGTATG GAAGGGAGCACCAACAACGCCACTGGTGACCTTGGCTACGACTAAAGTTAT
genomic: GATGGAATGCATGTATCGCTCTTGTGTGTGGCAACTGCGTTGTATGgtgagacctc ... tgttgggtagGAAGGGAGCACCAACAACGCCACTGGTGACCTTGGCTACGACTAAAGTTAT
tgtttcgttttctcaagggaagtgacaatgggtaaatacttgccgtgttgggtagGAAGGGAGCACCAACAACGCCACTGGTGACCTTGGCTACGACTAAAGTTATTGCTGAGGTTTTGGAGCGAAATAAACTACCTGGTGGCATTTTCACCTGT
taaatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctgatcattcatcattagagaatgtgacattttgtacgttttctgtttcgttttctcaagggaagtgacaatgggtaaatacttgccgtgttgggtagGAAGGGAGCACCAACAACGCCACTGGTGACCTTGGCTACGACTAAAGTTATTGCTGAGGTTTTGGAGCGAAATAAACTACCTGGTGGCATTTTCACCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG