1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgtgatacgtcttaacttttcgactcataaagggtgctcgaatgtagatgttatgaacaattggtttgatattaattggtcctgggtactgaaattttttatgtcattgatattagtcatttaatctgaagcaacatggttgtcttgaatctacagGTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATCAACAATCGCCCACTTTTACCCTTCAG
species | Physcomitrella patens |
transcript | PP1S101_241V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGGCTGGCGCAACAGATGGCAATGGAAAACAACTCCCCAGCACTGCGCAG GTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATCEST: gi|18341459|gb|BJ173494.1|BJ173494
genomic: CGGCTGGCGCAACAGATGGCAATGGAAAACAACTCCCCAGCACTGCGCAGgtgtgatacg ... gaatctacagGTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATC
EST: CGGCTGGCGCAACAGATGGCAATGGAAAACAACTCCCCAGCACTGCGCAG GTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATCEST: gi|37826602|gb|BJ584614.1|BJ584614
genomic: CGGCTGGCGCAACAGATGGCAATGGAAAACAACTCCCCAGCACTGCGCAGgtgtgatacg ... gaatctacagGTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATC
EST: GCTGGCGCAACAGATGGCAATGGAAAACAACTCCCCCAAGCACTGCGCAG GTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATCEST: gi|162178308|gb|FC354714.1|FC354714
genomic: GCTGGCGCAACAGATGGCAATGGAAAACAACT-CCCC-AGCACTGCGCAGgtgtgatacg ... gaatctacagGTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATC
EST: CGGCTGGCGCAACAGATGGCAATGGAAAACAACTCCCCAGCACTGCGCAG GTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATCEST: gi|162230978|gb|FC407233.1|FC407233
genomic: CGGCTGGCGCAACAGATGGCAATGGAAAACAACTCCCCAGCACTGCGCAGgtgtgatacg ... gaatctacagGTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATC
EST: CGGCTGGCGCAACAGATGGCAATGGAAAACAACTCCCCAGCACT--GC-- GTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATCEST: gi|208381969|gb|DC923465.1|DC923465
genomic: CGGCTGGCGCAACAGATGGCAATGGAAAACAACTCCCCAGCACTGCGCAGgtgtgatacg ... gaatctacagGTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATC
EST: CGGCTGGCGCAACAGATGGCAATGGAAAACAACTCCCCAGCACTGCGCAG GTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATCEST: gi|208392952|gb|DC928638.1|DC928638
genomic: CGGCTGGCGCAACAGATGGCAATGGAAAACAACTCCCCAGCACTGCGCAGgtgtgatacg ... gaatctacagGTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATC
EST: CGGCTGGCGCAACAGATGGCAATGGAAAACAACTCCCCAGCACTGCGCAG GTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATC
genomic: CGGCTGGCGCAACAGATGGCAATGGAAAACAACTCCCCAGCACTGCGCAGgtgtgatacg ... gaatctacagGTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATC
tgtcattgatattagtcatttaatctgaagcaacatggttgtcttgaatctacagGTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATCAACAATCGCCCACTTTTACCCTTCAG
atttaat putative branch site (score: 21)
atattagtcatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgatacgtcttaacttttcgactcataaagggtgctcgaatgtagatgttatgaacaattggtttgatattaattggtcctgggtactgaaattttttatgtcattgatattagtcatttaatctgaagcaacatggttgtcttgaatctacagGTAGCATTCCAGCAAGCCGACTATGTTGGCTGGAACTTGTGGGCTGCCATCAACAATCGCCCACTTTTACCCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA