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gtacgtttgttcatacctcatcctttctgtgagcaattccaacgatgtatgtgaccttgactttaatattactatatttatcttgaaattgcgtatcaagatctctgccgacatagatgttaaaagttaccattgatgtgaagGTGGTGAAAAGAGTCCCAGTACTGGCAGGAGTGTGTGCATCAGACCCTTTCCGGCGGATGGATCGATTTTTGGTTGAGCTGGAGCGATTGGGCTTTGACG
species | Physcomitrella patens |
transcript | PP1S9_334V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAGGATGCGAATGCTGTGGTGCTTGAAATGGCATCGGAGGTCTTACCT GTGGTGAAAAGAGTCCCAGTACTGGCAGGAGTGTGTGCATCAGACCCTTTCEST: gi|37842335|gb|BJ600343.1|BJ600343
genomic: CAAGGATGCGAATGCTGTGGTGCTTGAAATGGCATCGGAGGTCTTACCTgtacgtttgt ... tgatgtgaagGTGGTGAAAAGAGTCCCAGTACTGGCAGGAGTGTGTGCATCAGACCCTTTC
EST: ACAAGGATGNGAATGCTGTGGTGCTTGAAATGGCATCGGAGGTCTTACCT GTGGTGAAAAGAGTCCCAGTACTGGCAGGAGTGTGTGCATCAGACCCTTTCEST: gi|37838990|gb|BJ596998.1|BJ596998
genomic: ACAAGGATGCGAATGCTGTGGTGCTTGAAATGGCATCGGAGGTCTTACCTgtacgtttgt ... tgatgtgaagGTGGTGAAAAGAGTCCCAGTACTGGCAGGAGTGTGTGCATCAGACCCTTTC
EST: ACAAGGATGCGAATGCTGTGGTGCTTGAAATGGCATCGGAGGTCTTACCT GTGGTGAAAAGAGTCCCAGTACTGGCAGGAGTGTGTGCATCAGACCCTTTCEST: gi|162175714|gb|FC351301.1|FC351301
genomic: ACAAGGATGCGAATGCTGTGGTGCTTGAAATGGCATCGGAGGTCTTACCTgtacgtttgt ... tgatgtgaagGTGGTGAAAAGAGTCCCAGTACTGGCAGGAGTGTGTGCATCAGACCCTTTC
EST: ACAAGGATGCGAATGCTGTGGTGCTTGAAATGGCATCGGAGGTCTTACCT GTGGTGAAAAGAGTCCCAGTACTGGCAGGAGTGTGTGCATCAGACCCTTTC
genomic: ACAAGGATGCGAATGCTGTGGTGCTTGAAATGGCATCGGAGGTCTTACCTgtacgtttgt ... tgatgtgaagGTGGTGAAAAGAGTCCCAGTACTGGCAGGAGTGTGTGCATCAGACCCTTTC
ttgcgtatcaagatctctgccgacatagatgttaaaagttaccattgatgtgaagGTGGTGAAAAGAGTCCCAGTACTGGCAGGAGTGTGTGCATCAGACCCTTTCCGGCGGATGGATCGATTTTTGGTTGAGCTGGAGCGATTGGGCTTTGACG
cattgat putative branch site (score: 11)
ttaaaagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtttgttcatacctcatcctttctgtgagcaattccaacgatgtatgtgaccttgactttaatattactatatttatcttgaaattgcgtatcaagatctctgccgacatagatgttaaaagttaccattgatgtgaagGTGGTGAAAAGAGTCCCAGTACTGGCAGGAGTGTGTGCATCAGACCCTTTCCGGCGGATGGATCGATTTTTGGTTGAGCTGGAGCGATTGGGCTTTGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA