1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatattatttgagaaattcatagtgcaggcatgaatccctgctaacaatgttgaatatgagatcttaaaattttacgtccattaattgcattatgtacagCTAATCTACCAACTAGTGCCTTTTCAAACCACTTGGCAAGTCACGTCTGCGGGATCTACATTGGCTGGGCTGGCTTGGCCAATAGGGGTGTCTACAAGAT
species | Physcomitrella patens |
transcript | PP1S79_94V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTTATTAAGGGCTTTGGTCGTGGCTCAAAATTGCTTGGGACTCCCACTG CTAATCTACCAACTAGTGCCTTTTCAAACCACTTGGCAAGTCACGTCTGCGEST: gi|37835542|gb|BJ593554.1|BJ593554
genomic: AGTTATTAAGGGCTTTGGTCGTGGCTCAAAATTGCTTGGGACTCCCACTGgtattgtcta ... ttatgtacagCTAATCTACCAACTAGTGCCTTTTCAAACCACTTGGCAAGTCACGTCTGCG
EST: AGTTATTAAGGGCTTTGGTCGTGGCTCAAAATTGCTTGGGACTCCCACTG CTAATCTACCAACTAGTGCCTTTTCAAACCACTTGGCAAGTCACGTCTGCGEST: gi|67696608|gb|BJ956841.1|BJ956841
genomic: AGTTATTAAGGGCTTTGGTCGTGGCTCAAAATTGCTTGGGACTCCCACTGgtattgtcta ... ttatgtacagCTAATCTACCAACTAGTGCCTTTTCAAACCACTTGGCAAGTCACGTCTGCG
EST: AGTTATTAAGGGCTTTGGTCGTGGCTCAAAATTGCTTGGGACTCCCACTG CTAATCTACCAACTAGTGCCTTTTCAAACCACTTGGCAAGTCACGTCTGCGEST: gi|162214903|gb|FC390463.1|FC390463
genomic: AGTTATTAAGGGCTTTGGTCGTGGCTCAAAATTGCTTGGGACTCCCACTGgtattgtcta ... ttatgtacagCTAATCTACCAACTAGTGCCTTTTCAAACCACTTGGCAAGTCACGTCTGCG
EST: AGTTATTAAGGGCTTTGGTCGTGGCTCAAA-TTGCTTGGGACTCC-ACTG CTA-TCTACCA-CTAGEST: gi|208360015|gb|DC939319.1|DC939319
genomic: AGTTATTAAGGGCTTTGGTCGTGGCTCAAAATTGCTTGGGACTCCCACTGgtattgtcta ... ttatgtacagCTAATCTACCAACTAG
EST: AGTTAT-AANGGCTTTGGTCGTGGCTCAAA-TNGCTTGGGACTCC-ACTG CTA-TCTAC-AACTANTGCCTTT
genomic: AGTTATTAAGGGCTTTGGTCGTGGCTCAAAATTGCTTGGGACTCCCACTGgtattgtcta ... ttatgtacagCTAATCTACCAACTAGTGCCTTT
caatgttgaatatgagatcttaaaattttacgtccattaattgcattatgtacagCTAATCTACCAACTAGTGCCTTTTCAAACCACTTGGCAAGTCACGTCTGCGGGATCTACATTGGCTGGGCTGGCTTGGCCAATAGGGGTGTCTACAAGAT
cattaat putative branch site (score: 2)
aatatgagatcttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatattatttgagaaattcatagtgcaggcatgaatccctgctaacaatgttgaatatgagatcttaaaattttacgtccattaattgcattatgtacagCTAATCTACCAACTAGTGCCTTTTCAAACCACTTGGCAAGTCACGTCTGCGGGATCTACATTGGCTGGGCTGGCTTGGCCAATAGGGGTGTCTACAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - tgttgaa