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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacctattagaatggtttccgcgtctctctctttcttttccctatttatgcagtgtgtttgtattacaagtggtcataggcagtatcctccgctcttttcgaactcgtaattgccattctagaacctttgcaggatgtggcctttggatttatttttgttcattccgtctgcagGTCGGTGTGCAATTCATTGGCAACACTGTATACACTGCTGTTTGGGTTGCTGCAGTGTGCCTTTTTATGGAGTTGTTGGGATTCTCGACGCAAAAATGGA

Basic information

species Physcomitrella patens
transcript PP1S79_156V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S79_156V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: AT5G10490.1 (Arabidopsis thaliana), 3'ss of exon 8
---------gtaagacctattagaatggtttccgcgtctctctctttcttttccctatttatgcagtgt---gtttgtattacaagtggtcataggcagtatcctccgctcttttcgaactcgtaattgccattctagaacctttgcaggatgtggcctttggatttatttttgttcattccgtctgcagGTCGGTGTGCAATTCATTGGCAACACTGTATACACTGCTGTTTGGGTTGCTGCAGTGTGCCTTTTTATGGAGTTGTTGGGATTCTCGACGCAAAAATGGA
         || | ||  || | ||  | ||        |  | | |    |   ||||  |    |||   || | | || ||  |     || |||  |||         | || |     |||||| | ||||  |    ||     |  | |||  |||| |  |                  ||| | ||  | |||||   ||| ||  |  | ||  ||||||| ||||||||||| || |  ||||| ||||||||| |||| ||||| || ||||||||| 
gtatgtaaagtgacactcataaaaagtgctttaataatacattttgtagagttattattcttaggatgtttggtctattttgcatatctgtctacgcaagatcagaaatctctatcaacaatataattggc-ttctcaatttgttttgctaatttgcccctggaatggt-----------------acagATGGGATTTCAATTTGCTGGGAAAGCATTGTATTCTGCTGTATGGGTTGCTGCTGTATCACTTTTCATGGAGTTGCTGGGTTTCTCTACACAAAAATGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaacctttgcaggatgtggcctttggatttatttttgttcattccgtctgcagGTCGGTGTGCAATTCATTGGCAACACTGTATACACTGCTGTTTGGGTTGCTGCAGTGTGCCTTTTTATGGAGTTGTTGGGATTCTCGACGCAAAAATGGA
                                 tttttgttcattcc  CT-rich tract
                            atttatttttgttcat  TA-rich tract