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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttgttgttttcacttgggaggtcttacacattctattatagaaaatgtgcggcttaaggttgctgtgatttggtgttgtttgagcagttttagttggacaaaagatttgatgtagctggtttattttgtgtgaatgcaatttctgaagcaatatttgttgatatcagGGTACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTCAG

Basic information

species Physcomitrella patens
transcript PP1S78_8V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208385167|gb|DC923561.1|DC923561
EST:     GATTCTAGCGGGTCATGTTGAAGAGCGAAATGTTATTCGAGCAATAAGAT                         GGTACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTC
genomic: GATTCTAGCGGGTCATGTTGAAGAGCGAAATGTTATTCGAGCAATAAGATgtaagctttg ... ttgatatcagGGTACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTC
EST: gi|162167446|gb|FC343149.1|FC343149
EST:     GATTCTAGCGGGTCATGTTGAAGAGCGAAATGTTATTCGAGCAATAAGAT                         GGTACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTC
genomic: GATTCTAGCGGGTCATGTTGAAGAGCGAAATGTTATTCGAGCAATAAGATgtaagctttg ... ttgatatcagGGTACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTC
EST: gi|208390790|gb|DC938383.1|DC938383
EST:     GATTCTAGCGGGTCATGTTGAAGAGCGAAATGTTATTCGAGCAATAAGAT                         GGTACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTC
genomic: GATTCTAGCGGGTCATGTTGAAGAGCGAAATGTTATTCGAGCAATAAGATgtaagctttg ... ttgatatcagGGTACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTC
EST: gi|208373870|gb|DC956344.1|DC956344
EST:     GATTCTAGCGGGTCATGTTGAAGAGCGAAATGTTATTCGAGCAATAAGAT                         GGTACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTC
genomic: GATTCTAGCGGGTCATGTTGAAGAGCGAAATGTTATTCGAGCAATAAGATgtaagctttg ... ttgatatcagGGTACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTC
EST: gi|208366945|gb|DC951432.1|DC951432
EST:     GATTCTAGCGGGTCATGTTGAAGAGCGAAATGTTATTCGAGCAATAAGAT                         GGTACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTC
genomic: GATTCTAGCGGGTCATGTTGAAGAGCGAAATGTTATTCGAGCAATAAGATgtaagctttg ... ttgatatcagGGTACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctggtttattttgtgtgaatgcaatttctgaagcaatatttgttgatatcagGGTACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTCAG
                                           tgttgat  putative branch site (score: 4)
                                     aatatttgttgatat  TA-rich tract