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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgtttttatgttgatggtgtaatttttcgctcatatctgctgcgcaaaattgaaaaaggcaattcatcatgcatacttgtctttctttacttcacgtgttcagGTAGAGCGGCTGGTGCAAGAAGACTCCCGAATTGATCAGTACCCGAAGCTTGTGAACGGGGATTCCCGAGTAGTGTGGGAGTGGCAAG

Basic information

species Physcomitrella patens
transcript PP1S6_218V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208371939|gb|DC948342.1|DC948342
EST:     ATCACCTACTACTGCCAAGCGAGAGGAAAGTGGCAACACTTTGGAAGGAG                         GTAGAGCGGCTGGTGCAAGAAGACTCCCGAATTGATCAGTACCCGAAGCTT
genomic: ATCACCTACTACTGCCAAGCGAGAGGAAAGTGGCAACACTTTGGAAGGAGgtaggtgttt ... acgtgttcagGTAGAGCGGCTGGTGCAAGAAGACTCCCGAATTGATCAGTACCCGAAGCTT
EST: gi|162201493|gb|FC378233.1|FC378233
EST:     ATCACCTACTACTGCCAAGCGAGAGGAAAGTGGCAACACTTTGGAAGGAG                         GTAGAGCGGCTGGTGCAAGAAGACTCCCGAATTGATCAGTACCCGAAGCTT
genomic: ATCACCTACTACTGCCAAGCGAGAGGAAAGTGGCAACACTTTGGAAGGAGgtaggtgttt ... acgtgttcagGTAGAGCGGCTGGTGCAAGAAGACTCCCGAATTGATCAGTACCCGAAGCTT
EST: gi|6167481|gb|AW145745.1|AW145745
EST:     CCAAGCGAGAGGAAAGTGGCAACACTTTGGAAGGAG                         GTAGAGCGGCTGGTGCAAGAAGACTCCCGAATTGATCAGTACCCGAAGCTT
genomic: CCAAGCGAGAGGAAAGTGGCAACACTTTGGAAGGAGgtaggtgttt ... acgtgttcagGTAGAGCGGCTGGTGCAAGAAGACTCCCGAATTGATCAGTACCCGAAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgaaaaaggcaattcatcatgcatacttgtctttctttacttcacgtgttcagGTAGAGCGGCTGGTGCAAGAAGACTCCCGAATTGATCAGTACCCGAAGCTTGTGAACGGGGATTCCCGAGTAGTGTGGGAGTGGCAAG
                               tctttctttacttcac  CT-rich tract
                                 tttcttta  TA-rich tract