1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aggtgtcacgagttaatgttgttcaaatagaaattttcgactgttatgaaactgtgtgactggctgctgcatcctctgacaacacctttctttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTACCACCAACACAATACCTGTGACGGAGAAAAATTACTTCCCTCAATTGACT
species | Physcomitrella patens |
transcript | PP1S42_193V6.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAG TCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTACEST: gi|162173033|gb|FC349165.1|FC349165
genomic: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAGgtgaagttgc ... tttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTAC
EST: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAG TCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTACEST: gi|67693971|gb|BJ954204.1|BJ954204
genomic: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAGgtgaagttgc ... tttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTAC
EST: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAG TCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTACEST: gi|162176833|gb|FC353341.1|FC353341
genomic: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAGgtgaagttgc ... tttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTAC
EST: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAG TCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTACEST: gi|208350468|gb|DC926201.1|DC926201
genomic: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAGgtgaagttgc ... tttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTAC
EST: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAG TCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTACEST: gi|67693854|gb|BJ954087.1|BJ954087
genomic: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAGgtgaagttgc ... tttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTAC
EST: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAG TCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTACEST: gi|162176832|gb|FC353340.1|FC353340
genomic: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAGgtgaagttgc ... tttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTAC
EST: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAG TCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTACEST: gi|208397845|gb|DC916166.1|DC916166
genomic: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAGgtgaagttgc ... tttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTAC
EST: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAG TCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTACEST: gi|208351272|gb|DC921551.1|DC921551
genomic: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAGgtgaagttgc ... tttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTAC
EST: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAG TCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTACEST: gi|162261957|gb|FC436816.1|FC436816
genomic: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAGgtgaagttgc ... tttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTAC
EST: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAG TCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTACEST: gi|162252375|gb|FC427288.1|FC427288
genomic: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAGgtgaagttgc ... tttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTAC
EST: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAG TCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTACEST: gi|18341516|gb|BJ173551.1|BJ173551
genomic: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAGgtgaagttgc ... tttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTAC
EST: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAG TCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTACEST: gi|67694322|gb|BJ954555.1|BJ954555
genomic: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAGgtgaagttgc ... tttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTAC
EST: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAG TCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTAC
genomic: GCCGAAGGAGCTCGAGAAGTATATGCTTGTTGTACACATGCCGTCTTTAGgtgaagttgc ... tttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTAC
atgaaactgtgtgactggctgctgcatcctctgacaacacctttctttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTACCACCAACACAATACCTGTGACGGAGAAAAATTACTTCCCTCAATTGACT
ctctgac putative branch site (score: 3)
cacctttctttgct putative PPT
tttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtgtcacgagttaatgttgttcaaatagaaattttcgactgttatgaaactgtgtgactggctgctgcatcctctgacaacacctttctttgctgcagTCCACCTGCTATAGAAAGACTAGCAGGAGGATTATTTCATGAAGTCATTACCACCAACACAATACCTGTGACGGAGAAAAATTACTTCCCTCAATTGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA