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...tgtgctgaagaggggtaagagtggcaattatatcttgtaaatgaacatgtacgttggtgcgtatcgtgtcattaatggatgctgtaattgatgtgagcagGGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCAGTAGGGGCTAATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCT
species | Physcomitrella patens |
transcript | PP1S425_16V6.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCG GGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCAEST: gi|162265881|gb|FC442884.1|FC442884
genomic: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCGgtatgtatct ... atgtgagcagGGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCA
EST: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCG GGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCAEST: gi|37829212|gb|BJ587224.1|BJ587224
genomic: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCGgtatgtatct ... atgtgagcagGGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCA
EST: CGGGCATTGGTTTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCG GGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCAEST: gi|208367233|gb|DC951221.1|DC951221
genomic: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCGgtatgtatct ... atgtgagcagGGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCA
EST: CGGGCATTGGCCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCG GGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCAEST: gi|162173550|gb|FC350124.1|FC350124
genomic: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCGgtatgtatct ... atgtgagcagGGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCA
EST: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCG GGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCAEST: gi|208346039|gb|DC921284.1|DC921284
genomic: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCGgtatgtatct ... atgtgagcagGGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCA
EST: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCG GGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCAEST: gi|37832494|gb|BJ590506.1|BJ590506
genomic: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCGgtatgtatct ... atgtgagcagGGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCA
EST: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCG GGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCAEST: gi|208364864|gb|DC943682.1|DC943682
genomic: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCGgtatgtatct ... atgtgagcagGGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCA
EST: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCG GGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCAEST: gi|162173551|gb|FC350125.1|FC350125
genomic: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCGgtatgtatct ... atgtgagcagGGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCA
EST: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCG GGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCAEST: gi|208385034|gb|DC919714.1|DC919714
genomic: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCGgtatgtatct ... atgtgagcagGGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCA
EST: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCG GGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCA
genomic: CGGGCATTGGTCTACAGATGGCACAGCTTGGACTTGCTGCCTCTGCTGCGgtatgtatct ... atgtgagcagGGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCA
catgtacgttggtgcgtatcgtgtcattaatggatgctgtaattgatgtgagcagGGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCAGTAGGGGCTAATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCT
tcattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgctgaagaggggtaagagtggcaattatatcttgtaaatgaacatgtacgttggtgcgtatcgtgtcattaatggatgctgtaattgatgtgagcagGGAGCAGCCAGGCGTGCCAATTTTAAGAAGCAAAATCCCGATGTTGAATCAGTAGGGGCTAATGAAGAGCCCGACAAGGAACCTTCCCCAAGGATGCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG