1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgaatacctgtcagatccctcttaggcccgttttagagaccatctggtaggatgatgatctcgtgcggttgtgggctctcaaatctaattgttttatttttttgtcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGTGGGAGTTTTTCGAAAACATCTACAAGCTTTCAGGAGTTCCCGTGGTGAC
species | Physcomitrella patens |
transcript | PP1S277_10V6.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTAGCAG CTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGTEST: gi|162155413|gb|FC332027.1|FC332027
genomic: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGT
EST: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTAGCAG CTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGTEST: gi|162150291|gb|FC326376.1|FC326376
genomic: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGT
EST: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTAGCAG CTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGTEST: gi|162174878|gb|FC351670.1|FC351670
genomic: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGT
EST: AGATCGTCAAGGCAGATGCATACGTAGCAG CTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGTEST: gi|162151154|gb|FC327153.1|FC327153
genomic: AGATCGTCAAGGCAGATGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGT
EST: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTAGCAG CTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGTEST: gi|162198693|gb|FC373474.1|FC373474
genomic: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGT
EST: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTAGCAG CTTGTGACGTGCCAGGAATTCATAGACTATTGCEST: gi|162267925|gb|FC444006.1|FC444006
genomic: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGC
EST: CAAGGCAGATGCATACGTGGCAG CTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGTEST: gi|162225911|gb|FC400955.1|FC400955
genomic: CAAGGCAGATGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGT
EST: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTAGCAG CTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGTEST: gi|162215092|gb|FC391562.1|FC391562
genomic: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGT
EST: TGCATACGTAGCAG CTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGTEST: gi|162151767|gb|FC328624.1|FC328624
genomic: TGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGT
EST: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTAGCAG CTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGTEST: gi|162241669|gb|FC418652.1|FC418652
genomic: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGT
EST: CAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTAGCAG CTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGTEST: gi|100358217|gb|BY965531.1|BY965531
genomic: CAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGT
EST: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTGGCAG CTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGTEST: gi|162230035|gb|FC405975.1|FC405975
genomic: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGT
EST: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTAGCAG CTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGTEST: gi|19789027|gb|BQ041054.1|BQ041054
genomic: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGT
EST: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTGGCAG CTTGTGACGTGCCAAGAATTCATAAACTATTGCCACAGACTTGGCGTGAGTEST: gi|162168664|gb|FC343926.1|FC343926
genomic: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGT
EST: GACAAAGGCAACTGAGAAGCAGATCGTCNAGGCAGATGCATACGTAGCAG CTTGTGACGTGCCAGGAATTCATAGACTEST: gi|162188826|gb|FC364840.1|FC364840
genomic: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACT
EST: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTAGCAG CTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGT
genomic: GACAAAGGCAACTGAGAAGCAGATCGTCAAGGCAGATGCATACGTGGCAGgtgaatacct ... tcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGT
ctcgtgcggttgtgggctctcaaatctaattgttttatttttttgtcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGTGGGAGTTTTTCGAAAACATCTACAAGCTTTCAGGAGTTCCCGTGGTGAC
atctaat putative branch site (score: 27)
ttttatttttttgtc putative PPT
tctcaaatctaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatacctgtcagatccctcttaggcccgttttagagaccatctggtaggatgatgatctcgtgcggttgtgggctctcaaatctaattgttttatttttttgtcgcacgcagCTTGTGACGTGCCAGGAATTCATAGACTATTGCCACAGCCTTGGCGTGAGTGGGAGTTTTTCGAAAACATCTACAAGCTTTCAGGAGTTCCCGTGGTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT