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...gagctagcatttatcaatatgtcttcgattacaccatttatttctgatcacttcagaaaagtagctgttctctgatgagtttgttagttacatctcgcagATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGG
species | Physcomitrella patens |
transcript | PP1S222_130V6.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAG ATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATEST: gi|162165174|gb|FC341676.1|FC341676
genomic: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAGgtatgtacaa ... catctcgcagATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGAT
EST: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAG ATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATEST: gi|162170244|gb|FC347364.1|FC347364
genomic: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAGgtatgtacaa ... catctcgcagATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGAT
EST: CCGTTTCTTTGTACCTATCTGGAATCGAGANCA-TATCGCTAATGTCCAG ATTGTTTTTAAGGAGGACTTTGGGAACTCAEST: gi|162263641|gb|FC440125.1|FC440125
genomic: CCGTTTCTTTGTACCTATCTGGAATCGAGA-CAATATCGCTAATGTCCAGgtatgtacaa ... catctcgcagATTGTTTTTAAGGAGGACTTTGG-AACTCA
EST: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAG ATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATEST: gi|162276852|gb|FC452534.1|FC452534
genomic: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAGgtatgtacaa ... catctcgcagATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGAT
EST: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAG ATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATEST: gi|162149665|gb|FC326716.1|FC326716
genomic: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAGgtatgtacaa ... catctcgcagATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGAT
EST: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAG ATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATEST: gi|162162513|gb|FC338607.1|FC338607
genomic: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAGgtatgtacaa ... catctcgcagATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGAT
EST: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAG ATTGTTTTTA-GGAGGACTTTGGAAACTCA-GGACGAGGTGGTTATTTTGA
genomic: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAGgtatgtacaa ... catctcgcagATTGTTTTTAAGGAGGACTTTGGAA-CTCAAGGACGAGGTGGTTATTTTGA
gatcacttcagaaaagtagctgttctctgatgagtttgttagttacatctcgcagATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGG
aaaagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagctagcatttatcaatatgtcttcgattacaccatttatttctgatcacttcagaaaagtagctgttctctgatgagtttgttagttacatctcgcagATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGATGAGTATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA