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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaaaacatcgtcctatatagattgaacaccctcgctgctttcatacactttcttagtgtaggtgtttgtaatacatctctttttggttccctcttctctctccactgatcctgttagaaataattttctacgtaatctagtgccttgcaagcgtttctttattttcttacttcagaaggtgcgtcatacagGTTGGAAGAACTGCAAGTGCTCGACATTAAGTTTCTCTATGGCTGTGCCAATCCTACCATTGCGGTTCTTTATCAG

Basic information

species Physcomitrella patens
transcript PP1S203_55V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S203_55V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ23079 (Selaginella moellendorffii), 3'ss of exon 7
gtatgaaaaacatcgtcctatatagattgaacaccctcgctgctttcatacactttcttagtgtaggtgtttgtaatacatctctttttggttccctcttctctctccactgatcctgttagaaataattttctacgtaatctagtgccttgcaagcgtttctttattttcttacttcagaaggtgcgtcatacagGTTGGAAGAACTGCAAGTGCTCGACATTAAGTTTCTCTATGGCTGTGCCAATCCTACCATTGCGGTTCTTTATCAG
                                                                                                                                                      |   |  |||| |    | |   ||         ||        ||| ||||||||||||||||||| ||||| ||||| || ||||||||  | || || || ||||| || ||||| |||
-----------------------------------------------------------------------------------------------------------------------------------------------------gtaagaatgtttttcctgtgtgcaacgcttaggattgtcaatcttagGCTGGAAGAACTGCAAGTGCTGGACATAAAGTTCCTGTATGGCTGCTCGAAACCAACAATTGCTGTCCTTTACCAG

upper sequence: PP1S203_55V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ30457 (Selaginella moellendorffii), 3'ss of exon 7
gtatgaaaaacatcgtcctatatagattgaacaccctcgctgctttcatacactttcttagtgtaggtgtttgtaatacatctctttttggttccctcttctctctccactgatcctgttagaaataattttctacgtaatctagtgccttgcaagcgtttctttattttcttacttcagaaggtgcgtcatac--agGTTGGAAGAACTGCAAGTGCTCGACATTAAGTTTCTCTATGGCTGTGCCAATCCTACCATTGCGGTTCTTTATCAG
                                                                                                                                                       | |||  | | |||  | | |       | ||    ||||  |  ||| ||||||||||||||||||| ||||| ||||| || ||||||||  | || || || ||||| || ||||| |||
-------------------------------------------------------------------------------------------------------------------------------------------------------gtaagaatgtttttcctgtgtgcaacgcgtagtattgtcaatcttagGCTGGAAGAACTGCAAGTGCTGGACATAAAGTTCCTGTATGGCTGCTCGAAACCAACAATTGCTGTCCTTTACCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagtgccttgcaagcgtttctttattttcttacttcagaaggtgcgtcatacagGTTGGAAGAACTGCAAGTGCTCGACATTAAGTTTCTCTATGGCTGTGCCAATCCTACCATTGCGGTTCTTTATCAG
                           ttcttac  putative branch site (score: 2)
                 tttctttattttctta  TA-rich tract