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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgagaacctaaatgcgtgatgtttcaaattaatattttgctcgtgtttgctgctcaagaacgcaactagatcaggattgagggatcgaacatttcaacgatgcctgttctgccctgcaattaactgctggaacacagtactaatattattttacttcatttttttgtctcgcagGAGTCCAACGCAAATCTTGATTACATTGTTTCAGTTGCAAAAAAGCTACAG

Basic information

species Physcomitrella patens
transcript PP1S180_53V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208374343|gb|DC941156.1|DC941156
EST:     AGTGGTGCTTTCATGATCGCGATATCGCGCCTGAGGGGTCTACACTTGAG                         GAGTCCAACGCAAATCTTGATTACATTGTTTCAGTTGCAAAAAAGCTACAG
genomic: AGTGGTGCTTTCATGATCGCGATATCGCGCCTGAGGGGTCTACACTTGAGgttgagaacc ... tgtctcgcagGAGTCCAACGCAAATCTTGATTACATTGTTTCAGTTGCAAAAAAGCTACAG
EST: gi|100392407|gb|BY953347.1|BY953347
EST:     AGTGGTGCTTTCATGATCGCGATATCGCGCCTGAGGGGTCTACACTTGAG                         GAGTCCAACGCAAATCTTGATTACATTGTTTCAGTTGCAAAAAAGCTACAG
genomic: AGTGGTGCTTTCATGATCGCGATATCGCGCCTGAGGGGTCTACACTTGAGgttgagaacc ... tgtctcgcagGAGTCCAACGCAAATCTTGATTACATTGTTTCAGTTGCAAAAAAGCTACAG
EST: gi|100358061|gb|BY965452.1|BY965452
EST:     AGTGGTGCTTTCATGATCGCGATATCGCGCCTGAGGGGTCTACACTTGAG                         GAGTCCAACGCAAATCTTGATTACATTGTTTCAGTTGC
genomic: AGTGGTGCTTTCATGATCGCGATATCGCGCCTGAGGGGTCTACACTTGAGgttgagaacc ... tgtctcgcagGAGTCCAACGCAAATCTTGATTACATTGTTTCAGTTGC
EST: gi|100404244|gb|BY955328.1|BY955328
EST:     AGTGGTGCTTTCATGATCGCGATATCGCGCCTGAGGGGTCTACACTTGAG                         GAGTCCAACGCAAATCTTGATTACATTGTTTCAGTTGCAAAAAAGCTACAG
genomic: AGTGGTGCTTTCATGATCGCGATATCGCGCCTGAGGGGTCTACACTTGAGgttgagaacc ... tgtctcgcagGAGTCCAACGCAAATCTTGATTACATTGTTTCAGTTGCAAAAAAGCTACAG
EST: gi|100398077|gb|BY954076.1|BY954076
EST:     AGTGGTGCTTTCATGATCGCGATATCGCGCCTGAGGGGTCTACACTTGAG                         GAGTCCAACGCAAATCTTGATTACATTGTTTCAGTTGCAAAAAAGCTACAG
genomic: AGTGGTGCTTTCATGATCGCGATATCGCGCCTGAGGGGTCTACACTTGAGgttgagaacc ... tgtctcgcagGAGTCCAACGCAAATCTTGATTACATTGTTTCAGTTGCAAAAAAGCTACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaactgctggaacacagtactaatattattttacttcatttttttgtctcgcagGAGTCCAACGCAAATCTTGATTACATTGTTTCAGTTGCAAAAAAGCTACAG
                  tactaat  putative branch site (score: 1)
                             ttttacttcatttttt  putative PPT
                agtactaatattattt  TA-rich tract