1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtagccgaaagaagtcacgaatttcttggttgtttgagcgatgttgataatagtttagatcttgttttcttgcactaaattttattgctttttacggttgtgttctcttattttattttattttattttaagctcaacttttttcgttttacgctcacttgcaattttctgtacctattattctacagCTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAATGCGCTTTCTTATATGCCAAACGTCGGCTTTACCATTGCTGGAAAGTCTT
species | Physcomitrella patens |
transcript | PP1S113_31V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAG CTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAATEST: gi|37825124|gb|BJ583190.1|BJ583190
genomic: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAGgtagccgaaa ... tattctacagCTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAAT
EST: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAG CTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAATEST: gi|67727315|gb|BJ977574.1|BJ977574
genomic: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAGgtagccgaaa ... tattctacagCTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAAT
EST: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAG CTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAATEST: gi|162211128|gb|FC387152.1|FC387152
genomic: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAGgtagccgaaa ... tattctacagCTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAAT
EST: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAG CTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAATEST: gi|67723726|gb|BJ973985.1|BJ973985
genomic: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAGgtagccgaaa ... tattctacagCTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAAT
EST: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAG CTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAATEST: gi|162151132|gb|FC327651.1|FC327651
genomic: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAGgtagccgaaa ... tattctacagCTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAAT
EST: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAG CTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAATEST: gi|162156150|gb|FC332525.1|FC332525
genomic: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAGgtagccgaaa ... tattctacagCTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAAT
EST: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAG CTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAATEST: gi|67725928|gb|BJ976187.1|BJ976187
genomic: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAGgtagccgaaa ... tattctacagCTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAAT
EST: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAG CTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAATEST: gi|162157105|gb|FC333675.1|FC333675
genomic: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAGgtagccgaaa ... tattctacagCTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAAT
EST: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAG CTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAATEST: gi|37844744|gb|BJ602752.1|BJ602752
genomic: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAGgtagccgaaa ... tattctacagCTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAAT
EST: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAG CTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAAT
genomic: AGCTGAGAATGAACAGAACCAAGGAGGAGATAGATGCTTACTTGAATCAGgtagccgaaa ... tattctacagCTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAAT
tcaacttttttcgttttacgctcacttgcaattttctgtacctattattctacagCTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAATGCGCTTTCTTATATGCCAAACGTCGGCTTTACCATTGCTGGAAAGTCTT
cgctcac putative branch site (score: 5)
ttattct putative PPT
tattattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagccgaaagaagtcacgaatttcttggttgtttgagcgatgttgataatagtttagatcttgttttcttgcactaaattttattgctttttacggttgtgttctcttattttattttattttattttaagctcaacttttttcgttttacgctcacttgcaattttctgtacctattattctacagCTTTGTGAGCGATTGCCTAGTCCAAACGGCGAATCAGCTGTGGATTGCAATGCGCTTTCTTATATGCCAAACGTCGGCTTTACCATTGCTGGAAAGTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA