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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgactattcctgttcattgttctctggtagctattattggtattttccttcatcaaattgtgagaaacatttcagaatatttgactctcattacgttgtctgacgaagGTACAATATGGAATAAATCGGATAGAGAACACCCTTCCTCGCCTTTACCAG

Basic information

species Physcomitrella patens
transcript PP1S9_243V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162192987|gb|FC369903.1|FC369903
EST:     ACGCTGTCCCAATCACTCTCGGACAAGTTTTTAGTGCCTATTGCACACAG                         GTACAATATGGAATAAATCGGATAGAGAACACCCTTCCTCGCCTTTACCAG
genomic: ACGCTGTCCCAATCACTCTCGGACAAGTTTTTAGTGCCTATTGCACACAGgtacgactat ... tctgacgaagGTACAATATGGAATAAATCGGATAGAGAACACCCTTCCTCGCCTTTACCAG
EST: gi|162189500|gb|FC365514.1|FC365514
EST:     ACGCTGTCCCAATCACTCTCGGACAAGTTTTTAGTGCCTATTGCACACAG                         GTACAATATGGAATAAATCGGATAGAGAACACCCTTCCTCGCCTTTACCAG
genomic: ACGCTGTCCCAATCACTCTCGGACAAGTTTTTAGTGCCTATTGCACACAGgtacgactat ... tctgacgaagGTACAATATGGAATAAATCGGATAGAGAACACCCTTCCTCGCCTTTACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaattgtgagaaacatttcagaatatttgactctcattacgttgtctgacgaagGTACAATATGGAATAAATCGGATAGAGAACACCCTTCCTCGCCTTTACCAG
                                            gtctgac  putative branch site (score: 3)
               atttcagaatattt  TA-rich tract