1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgcggctcgcaccttgtgcagaatatttttagtgttacatttttaacttcaatttctaatttctatacgtatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGAATCGATGGGCCATCCAAGCTAAGAAACTTCCTTTTGTCCCCATACCAG
species | Physcomitrella patens |
transcript | PP1S79_105V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAG GCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGEST: gi|162256292|gb|FC432198.1|FC432198
genomic: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTG
EST: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAG GCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGEST: gi|162259819|gb|FC435954.1|FC435954
genomic: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTG
EST: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAG GCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGEST: gi|208367986|gb|DC955393.1|DC955393
genomic: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTG
EST: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAG GCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGEST: gi|162276087|gb|FC452363.1|FC452363
genomic: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTG
EST: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAG GCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGEST: gi|67577930|gb|BJ950097.1|BJ950097
genomic: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTG
EST: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAG GCAACTATCTTGAGGAEST: gi|208352691|gb|DC921425.1|DC921425
genomic: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGA
EST: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAG GCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGEST: gi|162256291|gb|FC432197.1|FC432197
genomic: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTG
EST: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAG GCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGEST: gi|208377554|gb|DC922657.1|DC922657
genomic: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTG
EST: TCCGTTNTAAGCATGCTGCTGAAGAGGCAGTTATGCAGNACTTTCCTGAG GCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGEST: gi|162259818|gb|FC435953.1|FC435953
genomic: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTG
EST: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCTTGAG GCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGEST: gi|208367694|gb|DC955025.1|DC955025
genomic: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTG
EST: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAG GCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGEST: gi|37846724|gb|BJ604732.1|BJ604732
genomic: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTG
EST: TCCGTTNTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAG GCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGEST: gi|67578914|gb|BJ951081.1|BJ951081
genomic: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTG
EST: TTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAG GCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGEST: gi|162276086|gb|FC452362.1|FC452362
genomic: TTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTG
EST: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAG GCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGEST: gi|67577666|gb|BJ949833.1|BJ949833
genomic: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTG
EST: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAG GCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGEST: gi|208393451|gb|DC942521.1|DC942521
genomic: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTG
EST: TCCGTTCTAAGCATGCTGCTGAAAANGCAGTTATGCANAACTTTCCTGAG GCACCTATCTTGAGGACAGCGCCTTTGGTT
genomic: TCCGTTCTAAGCATGCTGCTGAAGAGGCAGTTATGCAGAACTTTCCTGAGgtgcggctcg ... tatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTT
atttttagtgttacatttttaacttcaatttctaatttctatacgtatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGAATCGATGGGCCATCCAAGCTAAGAAACTTCCTTTTGTCCCCATACCAG
ttctaat putative branch site (score: 4)
atttttaacttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggctcgcaccttgtgcagaatatttttagtgttacatttttaacttcaatttctaatttctatacgtatgaaacagGCAACTATCTTGAGGACAGCGCCTTTGGTTGGTGTTGAGGACCGTTTGCTGAATCGATGGGCCATCCAAGCTAAGAAACTTCCTTTTGTCCCCATACCAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA