1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttcgcaacgttggtgtgcttgctgtctgtaatggctgttattagtgcactattgaggcaatgatctctgatcaatatgtgcatctcgttatagtggatgaggcgaacatgatgtgaacttggtgattattactgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGCTCTCCCGGCAGTTCTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTA
species | Physcomitrella patens |
transcript | PP1S795_4V6.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGGAAATTCTGGGCGTCTAGAGAAATTCGCT AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGCEST: gi|18335829|gb|BJ167850.1|BJ167850
genomic: AGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
EST: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCT AACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
genomic: AATATAAAAACAATGATCAGGGAAATTCTGGGCGTCTAGAGAAATTCGCTgtaagttcgc ... ctgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGC
gttatagtggatgaggcgaacatgatgtgaacttggtgattattactgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGCTCTCCCGGCAGTTCTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTA
tgattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcgcaacgttggtgtgcttgctgtctgtaatggctgttattagtgcactattgaggcaatgatctctgatcaatatgtgcatctcgttatagtggatgaggcgaacatgatgtgaacttggtgattattactgtatgcagAACTCGTCCTCTATATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGCTCTCCCGGCAGTTCTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA