1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtgtcgctcctctttgatgtcaagtgtttccgtcaaggaatgtgcaggtctctttggaggcgagaggggcaaagtttctatgtgcttgacgatcgttaactgatccgcctcgtttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAGCTCAGCAAGCTTCACCCGATCCATCATCTGCTGTTCCCGCACTGCAGG
species | Physcomitrella patens |
transcript | PP1S419_7V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|100423902|gb|BY976582.1|BY976582
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162256614|gb|FC432924.1|FC432924
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162158128|gb|FC333923.1|FC333923
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162249202|gb|FC421545.1|FC421545
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162273902|gb|FC450041.1|FC450041
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162215903|gb|FC392320.1|FC392320
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: CTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162250241|gb|FC425492.1|FC425492
genomic: CTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162270721|gb|FC446334.1|FC446334
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162167391|gb|FC343094.1|FC343094
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162178773|gb|FC354510.1|FC354510
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162164877|gb|FC341366.1|FC341366
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162180667|gb|FC357024.1|FC357024
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|67701793|gb|BJ962026.1|BJ962026
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGEST: gi|162165033|gb|FC342224.1|FC342224
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCG
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|100386618|gb|BY970159.1|BY970159
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162188009|gb|FC364999.1|FC364999
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162173204|gb|FC349986.1|FC349986
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162240726|gb|FC416318.1|FC416318
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162235808|gb|FC412359.1|FC412359
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162245537|gb|FC423272.1|FC423272
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|100388490|gb|BY952092.1|BY952092
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|100386918|gb|BY988187.1|BY988187
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGEST: gi|100423651|gb|BY976495.1|BY976495
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCG
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162154367|gb|FC330706.1|FC330706
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162167824|gb|FC344554.1|FC344554
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|100426164|gb|BY958760.1|BY958760
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: TGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162276105|gb|FC452381.1|FC452381
genomic: TGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162200069|gb|FC376531.1|FC376531
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|100442367|gb|BY981391.1|BY981391
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: CTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|67573583|gb|BJ946407.1|BJ946407
genomic: CTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162168254|gb|FC344984.1|FC344984
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAEST: gi|162191586|gb|FC367631.1|FC367631
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
EST: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTT TACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
genomic: GCTCACGCCACCAACAATGAAATGACTGTGCATCAATCTGTCAACCATTTgtgagtgtcg ... tttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCA
ggcaaagtttctatgtgcttgacgatcgttaactgatccgcctcgtttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAGCTCAGCAAGCTTCACCCGATCCATCATCTGCTGTTCCCGCACTGCAGG
aactgat putative branch site (score: 85)
cctcgttt putative PPT
tttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgtcgctcctctttgatgtcaagtgtttccgtcaaggaatgtgcaggtctctttggaggcgagaggggcaaagtttctatgtgcttgacgatcgttaactgatccgcctcgtttggtgcagTACGCGTTGCCACGCCGTCACCGAGCCCATGATCATCTCGACACACCGTCAGCTCAGCAAGCTTCACCCGATCCATCATCTGCTGTTCCCGCACTGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG