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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgcagttgctcccactcacccgtgcagtttacattgcaactattgtgatgcgtggttttctttaaccagcacttgtcatggaggcctcagttcacgtacggattcacggtgaataaattgtttgcatggtttgcagtcgtatgagttctctataacgtatttttgataatctgatgcttctggctcagTGAGAGCAAATTTCGAGTTTTTGAAAAAGCTTGGAGTTGAGAAGTGGTGCTTTCATGATCGCGATATCGCGCCTGAGGGGTCTACACTTGAG

Basic information

species Physcomitrella patens
transcript PP1S180_53V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18324844|gb|BJ156839.1|BJ156839
EST:     ATGGCCTTGGGATGACGGCAGTAATTCGCTGACCGTTGCCGTAAGAAGAA                         TGAGAGCAAATTTCGAGTTTTTGAAAAAGCTTGGAGTTGAGAAGTGGTGCT
genomic: ATGGCCTTGGGATGACGGCAGTAATTCGCTGACCGTTGCCGTAAGAAGAAgtaagtgcag ... tctggctcagTGAGAGCAAATTTCGAGTTTTTGAAAAAGCTTGGAGTTGAGAAGTGGTGCT
EST: gi|208374343|gb|DC941156.1|DC941156
EST:     ATGGCCTTGGGATGACGGCAGTAATTCGCTGACCGTTGCCGTAAGAAGAA                         TGAGAGCAAATTTCGAGTTTTTGAAAAAGCTTGGAGTTGAGAAGTGGTGCT
genomic: ATGGCCTTGGGATGACGGCAGTAATTCGCTGACCGTTGCCGTAAGAAGAAgtaagtgcag ... tctggctcagTGAGAGCAAATTTCGAGTTTTTGAAAAAGCTTGGAGTTGAGAAGTGGTGCT
EST: gi|100392407|gb|BY953347.1|BY953347
EST:     ATGGCCTTGGGATGACGGCAGTAATTCGCTGACCGTTGCCGTAAGAAGAA                         TGAGAGCAAATTTCGAGTTTTTGAAAAAGCTTGGAGTTGAGAAGTGGTGCT
genomic: ATGGCCTTGGGATGACGGCAGTAATTCGCTGACCGTTGCCGTAAGAAGAAgtaagtgcag ... tctggctcagTGAGAGCAAATTTCGAGTTTTTGAAAAAGCTTGGAGTTGAGAAGTGGTGCT
EST: gi|100358061|gb|BY965452.1|BY965452
EST:     ATGGCCTTGGGATGACGGCAGTAATTCGCTGACCGTTGCCGTAAGAAGAA                         TGAGAGCAAATTTCGAGTTTTTGAAAAAGCTTGGAGTTGAGAAGTGGTGCT
genomic: ATGGCCTTGGGATGACGGCAGTAATTCGCTGACCGTTGCCGTAAGAAGAAgtaagtgcag ... tctggctcagTGAGAGCAAATTTCGAGTTTTTGAAAAAGCTTGGAGTTGAGAAGTGGTGCT
EST: gi|100404244|gb|BY955328.1|BY955328
EST:     ATGGCCTTGGGATGACGGCAGTAATTCGCTGACCGTTGCCGTAAGAAGAA                         TGAGAGCAAATTTCGAGTTTTTGAAAAAGCTTGGAGTTGAGAAGTGGTGCT
genomic: ATGGCCTTGGGATGACGGCAGTAATTCGCTGACCGTTGCCGTAAGAAGAAgtaagtgcag ... tctggctcagTGAGAGCAAATTTCGAGTTTTTGAAAAAGCTTGGAGTTGAGAAGTGGTGCT
EST: gi|100398077|gb|BY954076.1|BY954076
EST:     ATGGCCTTGGGATGACGGCAGTAATTCGCTGACCGTTGCCGTAAGAAGAA                         TGAGAGCAAATTTCGAGTTTTTGAAAAAGCTTGGAGTTGAGAAGTGGTGCT
genomic: ATGGCCTTGGGATGACGGCAGTAATTCGCTGACCGTTGCCGTAAGAAGAAgtaagtgcag ... tctggctcagTGAGAGCAAATTTCGAGTTTTTGAAAAAGCTTGGAGTTGAGAAGTGGTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtcgtatgagttctctataacgtatttttgataatctgatgcttctggctcagTGAGAGCAAATTTCGAGTTTTTGAAAAAGCTTGGAGTTGAGAAGTGGTGCTTTCATGATCGCGATATCGCGCCTGAGGGGTCTACACTTGAG
                                         tgcttct  CT-rich tract
                        tatttttgataatct  TA-rich tract