Sequence
atgc intronic sequence ATGC exonic sequencegtacgacttcgttacaaattctgcacatgatctatgcactgatcctgtaaagacttcaatggtatttttgaatgctagcatgattagattttcaacttgagtaatgcatcctgattctttgtactccaatgaaatgctgtgttggtggacagCTGAAACTGTGATCTACAGAATATTCTACCATGTAAATAAATCTGGGAATGGTCGGCTACAACTTAGAGAGTTAAAACGGAGTAACTTAATTACTGCTCT
Basic information
species | Physcomitrella patens |
transcript | PP1S147_62V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S147_62V6.2 (Physcomitrella patens), 3'ss of exon 6
lower sequence: AT5G28850.1 (Arabidopsis thaliana), 3'ss of exon 5
gtacgacttcgttacaaattctgcacatgatctatgcactgatcctgtaaagacttcaatggtatttttgaatgctagcatgattagattttcaacttgagtaatgcatcctgattctttgtactccaatgaaatgctgtgttggtgga-cagCTGAAACTGTGATCTACAGAATATTCTACCATGTAAATAAATCTGGGAATGGTCGGCTACAACTTAGAGAGTTAAAACGGAGTAACTTAATTACTGCTCT
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----------------------------------------gaaaaaaaaaaaatctggagcttgtttatgaat-----catgt----attttga--tgaaacagctgatgct-atgctacatgctgatacaatttgc-attttgatgaaacagCTGAAACTGTCACCTACAGAATATTTTACTACATAAATAGATCTGGCAATGGTCGAATTACATTTAGGGAGCTTAAACGGGGAAACTTAATTGATGCTAT
upper sequence: PP1S147_62V6.2 (Physcomitrella patens), 3'ss of exon 6
lower sequence: EFJ20642 (Selaginella moellendorffii), 3'ss of exon 6
gtacgacttcgttacaaattctgcacatgatctatgcactgatcctgtaaagacttcaatggtatttttgaatgctagcatgattagattttcaacttgagtaatgcatcctgattctttgtactccaatgaaatgctgtgttggtggacagCTGAAACTGTGATCTACAGAATATTCTACCATGTAAATAAATCTGGGAATGGTCGGCTACAACTTAGAGAGTTAAAACGGAGTAACTTAATTACTGCTCT
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------------------------------------------------------gttggttgatttttttagtgtt-----gtttttgttgtcg-ctcagatcattctttttctttgtttgcttt---------tgttctttttgttcgcagCCGAGACAGTAATGTACAGGATATTCTACCATGTAAATAGATCTGGAAATGGAAGGCTATTGCTAAGAGAGTTGAGAAGAAGCAACCTTGTTGCAGCACT
upper sequence: PP1S147_62V6.2 (Physcomitrella patens), 3'ss of exon 6
lower sequence: EFJ32791 (Selaginella moellendorffii), 3'ss of exon 6
gtacgacttcgttacaaattctgcacatgatctatgcactgatcctgtaaagacttcaatggtatttttgaatgctagcatgattagattttcaacttga-gtaatgcatcctgattctttgtactccaatgaaat-gctgtgttggtggacagCTGAAACTGTGATCTACAGAATATTCTACCATGTAAATAAATCTGGGAATGGTCGGCTACAACTTAGAGAGTTAAAACGGAGTAACTTAATTACTGCTCT
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---------------------------------------------------------------------gttggctgatttgtttagtttttttttttgttgtcgctcaaatc-attctttttctttgtttgcttttgttctttttgttcgcagCCGAGACAGTAATGTACAGGATATTCTACCATGTAAATAGATCTGGAAATGGAAGGCTATTGCTAAGAGAGTTGAGAAGAAGCAACCTTGTTGCAGCACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162193203|gb|FC369963.1|FC369963EST: TCGCGGTTTGGAATTTCTTCATGATACCCCAGAGTTTCAAGACAGATATG CTGAAACTGTGATCTACAGAATATTCTACCATGTAAATAAATCTGGGAATG
genomic: TCGCGGTTTGGAATTTCTTCATGATACCCCAGAGTTTCAAGACAGATATGgtacgacttc ... tggtggacagCTGAAACTGTGATCTACAGAATATTCTACCATGTAAATAAATCTGGGAATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgagtaatgcatcctgattctttgtactccaatgaaatgctgtgttggtggacagCTGAAACTGTGATCTACAGAATATTCTACCATGTAAATAAATCTGGGAATGGTCGGCTACAACTTAGAGAGTTAAAACGGAGTAACTTAATTACTGCTCT
tcctgat putative branch site (score: 3)
aatgaaat TA-rich tract