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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacttgtctactggacgacagtctgtgttgtagatcaatcctcatttaaaactggcgtaaccctgtatatgagaactatatttggtatactttggaacagGATATTGGACAGCCAGGCTTCACACTTGGGGAGCGTCAACGTTTTGCTGAATGTCTATCGAA

Basic information

species Physcomitrella patens
transcript PP1S101_153V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37828701|gb|BJ586713.1|BJ586713
EST:     ACTTTTTCAGTAACGCCAAACTTCAGGGTTATACACCCCCAAATGCCGAG                         GATATTGGACAGCCAGGCTTCACACTTGGGGAGCGTCAACGTTTTGCTGAA
genomic: ACTTTTTCAGTAACGCCAAACTTCAGGGTTATACACCCCCAAATGCCGAGgtataaacta ... tttggaacagGATATTGGACAGCCAGGCTTCACACTTGGGGAGCGTCAACGTTTTGCTGAA
EST: gi|37841815|gb|BJ599823.1|BJ599823
EST:     CGCCAAACTTCAGGGTTATACACCCCCAAATGCCGAG                         GATATTGGACAGCCAGGCTTCACACTTGGGGAGCGTCAACGTTTTGCTGAA
genomic: CGCCAAACTTCAGGGTTATACACCCCCAAATGCCGAGgtataaacta ... tttggaacagGATATTGGACAGCCAGGCTTCACACTTGGGGAGCGTCAACGTTTTGCTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaaactggcgtaaccctgtatatgagaactatatttggtatactttggaacagGATATTGGACAGCCAGGCTTCACACTTGGGGAGCGTCAACGTTTTGCTGAATGTCTATCGAA
         gcgtaac  putative branch site (score: 3)
                            aactatattt  TA-rich tract