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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcgttcaatccatatgtgttattttctacttcttagtaccctaggcaataatctcataatctttcatctgcgcaattgttcattttgcgttcaaattttcatatttctttttactggcaacatatgcgttatgttgaatggcagcacttgttgatccaaatgcttctgagacatgaaattgtgtgaggtgccagAATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGCTG

Basic information

species Physcomitrella patens
transcript PP1S78_8V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208385167|gb|DC923561.1|DC923561
EST:     GCATNTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATG                         AATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTNTCTTGGC
genomic: GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATGgttagtcgtt ... gaggtgccagAATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
EST: gi|162167447|gb|FC343150.1|FC343150
EST:     GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATG                         AATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
genomic: GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATGgttagtcgtt ... gaggtgccagAATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
EST: gi|162167446|gb|FC343149.1|FC343149
EST:     GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATG                         AATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
genomic: GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATGgttagtcgtt ... gaggtgccagAATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
EST: gi|208390790|gb|DC938383.1|DC938383
EST:     GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATG                         AATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
genomic: GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATGgttagtcgtt ... gaggtgccagAATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
EST: gi|208373870|gb|DC956344.1|DC956344
EST:     GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATG                         AATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
genomic: GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATGgttagtcgtt ... gaggtgccagAATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
EST: gi|208366945|gb|DC951432.1|DC951432
EST:     GGCTCGTTTTGATCACCATTGTGCCTGGATG                         AATAACTGCATTGGTGAAGNCAATCTGCGATATTTTTTGTCGTTTCTTGGC
genomic: GGCTCGTTTTGATCACCATTGTGCCTGGATGgttagtcgtt ... gaggtgccagAATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcagcacttgttgatccaaatgcttctgagacatgaaattgtgtgaggtgccagAATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGCTG
         tgttgat  putative branch site (score: 4)
                                 atgaaatt  TA-rich tract