1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacatatgtttaaaggagaacgtagtttcgcttcttaagaagcattgggattaactctatcttagaaattctgaatttatcggtttaactgaatgaaagtttgtggtactcaagaatttgttgttggttgtgcagGTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAG
species | Physcomitrella patens |
transcript | PP1S54_156V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAG GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAGEST: gi|162280315|gb|FC456332.1|FC456332
genomic: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAGgtacatatgt ... ggttgtgcagGTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAG
EST: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAG GTCTTTCTCGATATTGGGGAAAEST: gi|162233608|gb|FC409367.1|FC409367
genomic: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAGgtacatatgt ... ggttgtgcagGTCTTTCTCGATATTGTGGAAA
EST: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAG GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAGEST: gi|208385555|gb|DC937100.1|DC937100
genomic: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAGgtacatatgt ... ggttgtgcagGTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAG
EST: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAG GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCANAAAGEST: gi|100384770|gb|BY950760.1|BY950760
genomic: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAGgtacatatgt ... ggttgtgcagGTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAG
EST: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAG GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAEST: gi|162223092|gb|FC399983.1|FC399983
genomic: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAGgtacatatgt ... ggttgtgcagGTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAA
EST: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAG GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCEST: gi|162178167|gb|FC354885.1|FC354885
genomic: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAGgtacatatgt ... ggttgtgcagGTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTC
EST: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAG GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAGEST: gi|67578518|gb|BJ950685.1|BJ950685
genomic: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAGgtacatatgt ... ggttgtgcagGTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAG
EST: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAG GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAGEST: gi|208393441|gb|DC904059.1|DC904059
genomic: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAGgtacatatgt ... ggttgtgcagGTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAG
EST: CGGGAGCTGTTGGNTGGANGCGAGAAGGTCTTGTTTACAAGAAAAATGAN GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAGAAEST: gi|100364351|gb|BY984569.1|BY984569
genomic: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAGgtacatatgt ... ggttgtgcagGTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAGGA
EST: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAG GTCTTTCTCGATATTGTGGAA
genomic: CGGGAGCTGTTGGTTGGAGGCGAGAAGGTCTTGTTTACAAGAAAAATGAGgtacatatgt ... ggttgtgcagGTCTTTCTCGATATTGTGGAA
cggtttaactgaatgaaagtttgtggtactcaagaatttgttgttggttgtgcagGTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAG
gtttaac putative branch site (score: 14)
aagaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatatgtttaaaggagaacgtagtttcgcttcttaagaagcattgggattaactctatcttagaaattctgaatttatcggtttaactgaatgaaagtttgtggtactcaagaatttgttgttggttgtgcagGTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC