1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttttaaataggcttacagattcagtgtactgggggacttttagttgaatgattttaacttatcgtatctgacctacacaaatatccctggtgtacgcagTTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCTTGCGCGGAAATTTTAACAACACGCAGCTTTACAA
species | Physcomitrella patens |
transcript | PP1S42_16V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTTTCTCGTCCATGTACCCCGTCAAGT TTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCTEST: gi|162231292|gb|FC406533.1|FC406533
genomic: TTTTTCTCGTCCATGTACCCCGTCAAGTgtaagtattc ... gtgtacgcagTTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCT
EST: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGT TTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCTEST: gi|162231291|gb|FC406532.1|FC406532
genomic: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGTgtaagtattc ... gtgtacgcagTTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCT
EST: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGT NTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCTEST: gi|162237827|gb|FC412480.1|FC412480
genomic: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGTgtaagtattc ... gtgtacgcagTTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCT
EST: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGT TTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCTEST: gi|37847707|gb|BJ605715.1|BJ605715
genomic: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGTgtaagtattc ... gtgtacgcagTTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCT
EST: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGT TTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCTEST: gi|208376982|gb|DC911050.1|DC911050
genomic: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGTgtaagtattc ... gtgtacgcagTTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCT
EST: GNCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGT TTGCGGTGATCCNTGTTCTTEST: gi|162154890|gb|FC331932.1|FC331932
genomic: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGTgtaagtattc ... gtgtacgcagTTGCGGTGATCCCTGTTCTT
EST: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGT TTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCTEST: gi|208371600|gb|DC952242.1|DC952242
genomic: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGTgtaagtattc ... gtgtacgcagTTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCT
EST: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGT TTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCTEST: gi|208399430|gb|DC924860.1|DC924860
genomic: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGTgtaagtattc ... gtgtacgcagTTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCT
EST: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGT TTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCTEST: gi|37835310|gb|BJ593322.1|BJ593322
genomic: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGTgtaagtattc ... gtgtacgcagTTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCT
EST: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGT TTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCTEST: gi|162154889|gb|FC331931.1|FC331931
genomic: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGTgtaagtattc ... gtgtacgcagTTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCT
EST: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGT TTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCTEST: gi|100387757|gb|BY951757.1|BY951757
genomic: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGTgtaagtattc ... gtgtacgcagTTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCT
EST: GTCATTTATGTTCTCTGTTATATTTTTCTCGCCCATGTACCCCGTCAAGT TTGCGGTGATCCCTGTTCTTTGGCGGTCTTTGGAGCAAGCA
genomic: GTCATTTATGTTCTCTGTTATATTTTTCTCGTCCATGTACCCCGTCAAGTgtaagtattc ... gtgtacgcagTTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCA
tgaatgattttaacttatcgtatctgacctacacaaatatccctggtgtacgcagTTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCTTGCGCGGAAATTTTAACAACACGCAGCTTTACAA
attttaacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttaaataggcttacagattcagtgtactgggggacttttagttgaatgattttaacttatcgtatctgacctacacaaatatccctggtgtacgcagTTGCGGTGATCCCTGTTCTTTGCCGGTCTTTGGAGCAAGCAGTGATGTTCTTGCGCGGAAATTTTAACAACACGCAGCTTTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacaca