1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggtgtttgcaatgctgtcatatatatatatatatatatatatatatatataatgtttcttcgttgacgttcgcaacctggttttgactgttggatgcagTGTAATGCTAAGGACTGCAGCTGCAAATGCCTTTCTCAGCATGCAAGATGCAGCGAGGAAAGACGGCATCTGGTTGATTCCTCTCTCTGG
species | Physcomitrella patens |
transcript | PP1S41_163V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCGAGGAGGCTCCCGAGTCTGAACTCAAACCTGTCCTTGCTGATGGCAG TGTAATGCTAAGGACTGCAGCTGCAAATGCCTTTCTCAGCATGCAAGATGCEST: gi|208351989|gb|DC925798.1|DC925798
genomic: GCCGAGGAGGCTCCCGAGTCTGAACTCAAACCTGTCCTTGCTGATGGCAGgtaataagat ... ttggatgcagTGTAATGCTAAGGACTGCAGCTGCAAATGCCTTTCTCAGCATGCAAGATGC
EST: GCCGAGGAGGCTCCCGAGTCCGAACTCAAACCTGTCCTTGCTGATGGCAG TGTAATGCTAAGGACTGCAGCTGCAAATGCCTTTCTCAGCATGCAAGATGCEST: gi|37852321|gb|BJ610329.1|BJ610329
genomic: GCCGAGGAGGCTCCCGAGTCTGAACTCAAACCTGTCCTTGCTGATGGCAGgtaataagat ... ttggatgcagTGTAATGCTAAGGACTGCAGCTGCAAATGCCTTTCTCAGCATGCAAGATGC
EST: TGAACTCAAACCTGTCCNTTGCTGATGGCAG TGTGATGCTAAGGACTGCAGCTGCAAATGCCTTTCTCAGCATGCAAGATGC
genomic: TGAACTCAAACCTGTCC-TTGCTGATGGCAGgtaataagat ... ttggatgcagTGTAATGCTAAGGACTGCAGCTGCAAATGCCTTTCTCAGCATGCAAGATGC
atatataatgtttcttcgttgacgttcgcaacctggttttgactgttggatgcagTGTAATGCTAAGGACTGCAGCTGCAAATGCCTTTCTCAGCATGCAAGATGCAGCGAGGAAAGACGGCATCTGGTTGATTCCTCTCTCTGG
ttttgac putative branch site (score: 3)
taatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtgtttgcaatgctgtcatatatatatatatatatatatatatatatataatgtttcttcgttgacgttcgcaacctggttttgactgttggatgcagTGTAATGCTAAGGACTGCAGCTGCAAATGCCTTTCTCAGCATGCAAGATGCAGCGAGGAAAGACGGCATCTGGTTGATTCCTCTCTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG