1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgaggttttcagctgaacttatgaatttaatcgctacagagtgttatgatttttgcttatttatgcaaaaacacgcggtgccatatcgttactttccctcattctcaattcctatgctccatacagGTACAATTGCAAACAGTGCCGCTCTTTTACACGCAGAAGGAGCGAAAGAAGTGTATGCTTGCTGCACACATGCGGTCTTTAG
species | Physcomitrella patens |
transcript | PP1S403_8V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTGAAAGGNAAAGTGGCTGTTATGGTTGACGACATGATAGACACTGCTG GTACAATTGCAAACAGTGCCGCTCTTTTACACGCAGAAGGAGCGAAAGAAGEST: gi|162192198|gb|FC367723.1|FC367723
genomic: TGTGAAAGGAAAAGTGGCTGTTATGGTTGACGACATGATAGACACTGCTGgtatgaggtt ... ctccatacagGTACAATTGCAAACAGTGCCGCTCTTTTACACGCAGAAGGAGCGAAAGAAG
EST: TGTGAAAGGAAAAGTGGCTGTTATGGTTGACGACATGATAGACACTGCTG GTACAATTGCAAACAGTGCCGCTCTTTTACACGCAGAAGGAGCGAAAGAAGEST: gi|208367687|gb|DC947379.1|DC947379
genomic: TGTGAAAGGAAAAGTGGCTGTTATGGTTGACGACATGATAGACACTGCTGgtatgaggtt ... ctccatacagGTACAATTGCAAACAGTGCCGCTCTTTTACACGCAGAAGGAGCGAAAGAAG
EST: TGTGAAAGGAAAAGTGGCTGTTATGGTTGACGACATGATAGACACTGCTG GTACAATTGCAAACAGTGCCGCTCTTTTACACGCAGAAGGAGCGAAAGAAGEST: gi|162165128|gb|FC341136.1|FC341136
genomic: TGTGAAAGGAAAAGTGGCTGTTATGGTTGACGACATGATAGACACTGCTGgtatgaggtt ... ctccatacagGTACAATTGCAAACAGTGCCGCTCTTTTACACGCAGAAGGAGCGAAAGAAG
EST: TGTGAAAGGAAAAGTGGCTGTTATGGTTGACGACATGATAGACACTGCTG GTACAATTGCAAACAGTGCCACTCTTTTACACGCAGAAGGAGCGAAAGAAG
genomic: TGTGAAAGGAAAAGTGGCTGTTATGGTTGACGACATGATAGACACTGCTGgtatgaggtt ... ctccatacagGTACAATTGCAAACAGTGCCGCTCTTTTACACGCAGAAGGAGCGAAAGAAG
cacgcggtgccatatcgttactttccctcattctcaattcctatgctccatacagGTACAATTGCAAACAGTGCCGCTCTTTTACACGCAGAAGGAGCGAAAGAAGTGTATGCTTGCTGCACACATGCGGTCTTTAG
ttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaggttttcagctgaacttatgaatttaatcgctacagagtgttatgatttttgcttatttatgcaaaaacacgcggtgccatatcgttactttccctcattctcaattcctatgctccatacagGTACAATTGCAAACAGTGCCGCTCTTTTACACGCAGAAGGAGCGAAAGAAGTGTATGCTTGCTGCACACATGCGGTCTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC