1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgtgtccttgaacttttatcttattttcatcctcagcatcagcagcagcagcattcacaattgtccttaaaccataaacctacattctttgccatgtggagaattcgtgatacagaggttggtttaacgtactaaagggcgttgttggattgcagGATGCACCTCTTGGAAGTGTGGACCGGAGGGTTCCTGATGTTCTGCGCTGTATACGATTTCTACTTCCAGGGCAAGAACCACTTCTACGTGTATCTGTTT
species | Physcomitrella patens |
transcript | PP1S36_62V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGCGCATGGCAAGCAACATGCTAGCAAGAGGGTGGAAAATGTCCGAAAG GATGCACCTCTTGGAAGTGTGGACCGGAGGGTTCCTGATGTTCTGCGCTGTEST: gi|37847359|gb|BJ605367.1|BJ605367
genomic: CAGCGCATGGCAAGCAACATGCTAGCAAGAGGGTGGAAAATGTCCGAAAGgtgtgtcctt ... tggattgcagGATGCACCTCTTGGAAGTGTGGACCGGAGGGTTCCTGATGTTCTGCGCTGT
EST: CAGCGCATGGCAAGCAACATGCTAGCAAGAGGGTGGAAAATGTCCGAAAG GATGCACCTCTTGGAAGTGTGGACCGGAGGGTTCCTGATGTTCTGCGCTGTEST: gi|208382282|gb|DC919270.1|DC919270
genomic: CAGCGCATGGCAAGCAACATGCTAGCAAGAGGGTGGAAAATGTCCGAAAGgtgtgtcctt ... tggattgcagGATGCACCTCTTGGAAGTGTGGACCGGAGGGTTCCTGATGTTCTGCGCTGT
EST: CAGCGCATGGCAAGCAACATGCTAGCAAGAGGGTGGAAAATGTCCGAAAG GATGCACCTCTTGGAAGTGTGGACCGGAGGGTTCCTGATGTTCTGCGCTGTEST: gi|208354350|gb|DC926569.1|DC926569
genomic: CAGCGCATGGCAAGCAACATGCTAGCAAGAGGGTGGAAAATGTCCGAAAGgtgtgtcctt ... tggattgcagGATGCACCTCTTGGAAGTGTGGACCGGAGGGTTCCTGATGTTCTGCGCTGT
EST: CAGCGCATGGCAAGCAACATGCTAGCAAGAGGGTGGAAAATGTCCGAAAG GATGCACCTCTTGGAAGTGTGGACCGGAGGGTTCCTGATGTTCTGCGCTGTEST: gi|37839708|gb|BJ597716.1|BJ597716
genomic: CAGCGCATGGCAAGCAACATGCTAGCAAGAGGGTGGAAAATGTCCGAAAGgtgtgtcctt ... tggattgcagGATGCACCTCTTGGAAGTGTGGACCGGAGGGTTCCTGATGTTCTGCGCTGT
EST: CAGCGCATGGCAAGCAACATGCTAGCAAGAGGGTGGAAAATGTCCGAAAG GATGCACCTCTTGGAAGTGTGGACCGGAGGGTTCCTGATGTTCTGCGCTGTEST: gi|67727759|gb|BJ978018.1|BJ978018
genomic: CAGCGCATGGCAAGCAACATGCTAGCAAGAGGGTGGAAAATGTCCGAAAGgtgtgtcctt ... tggattgcagGATGCACCTCTTGGAAGTGTGGACCGGAGGGTTCCTGATGTTCTGCGCTGT
EST: CAGCGCATGGCAAGCAACATGCTAGCAAGAGGGTGGAAAATGTCCGAAAG GATGCACCTCTTGGAAGTGTGGACCGGAGGGTTCCTGATGTTCTGCGCTGT
genomic: CAGCGCATGGCAAGCAACATGCTAGCAAGAGGGTGGAAAATGTCCGAAAGgtgtgtcctt ... tggattgcagGATGCACCTCTTGGAAGTGTGGACCGGAGGGTTCCTGATGTTCTGCGCTGT
gaattcgtgatacagaggttggtttaacgtactaaagggcgttgttggattgcagGATGCACCTCTTGGAAGTGTGGACCGGAGGGTTCCTGATGTTCTGCGCTGTATACGATTTCTACTTCCAGGGCAAGAACCACTTCTACGTGTATCTGTTT
tactaaa putative branch site (score: 7)
tactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtccttgaacttttatcttattttcatcctcagcatcagcagcagcagcattcacaattgtccttaaaccataaacctacattctttgccatgtggagaattcgtgatacagaggttggtttaacgtactaaagggcgttgttggattgcagGATGCACCTCTTGGAAGTGTGGACCGGAGGGTTCCTGATGTTCTGCGCTGTATACGATTTCTACTTCCAGGGCAAGAACCACTTCTACGTGTATCTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC