1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcttattattcatgtttataacaatttgtctaaattcttgagtttgctctcgtagatttgactccgttctctagctaatatctgatgcatttaggtttggcgacgtttatctcttctacattcgcgaacacttctgacgatatgcggcattgcagGATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGCATACGATTTTTACTTCCAGGGCAAGAACCATTTCTACGTGTATCTGTTT
species | Physcomitrella patens |
transcript | PP1S36_214V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAACGCATGGCAAGCAATGTGCTGGCCAGGGGGTGGAGGATGTCTGAGAG GATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGCEST: gi|208368302|gb|DC955513.1|DC955513
genomic: CAACGCATGGCAAGCAATGTGCTGGCCAGGGGGTGGAGGATGTCTGAGAGgtgcttatta ... ggcattgcagGATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGC
EST: CAACGCATGGCAAGCAATGTGCTGGCCAGGGGGTGGAGGATGTCTGAGAG GATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGCEST: gi|162176025|gb|FC351026.1|FC351026
genomic: CAACGCATGGCAAGCAATGTGCTGGCCAGGGGGTGGAGGATGTCTGAGAGgtgcttatta ... ggcattgcagGATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGC
EST: GGAGGATGTCTGAGAG GATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGCEST: gi|162256769|gb|FC432663.1|FC432663
genomic: GGAGGATGTCTGAGAGgtgcttatta ... ggcattgcagGATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGC
EST: CAACGCATGGCAAGCAATGTGCTGGCCAGGGGGTGGAGGATGTCTGAGAG GATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGCEST: gi|162256770|gb|FC432664.1|FC432664
genomic: CAACGCATGGCAAGCAATGTGCTGGCCAGGGGGTGGAGGATGTCTGAGAGgtgcttatta ... ggcattgcagGATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGC
EST: CAACGCATGGCAAGCAATGTGCTGGCCAGGGGGTGGAGGATGTCTGAGAG GATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGCEST: gi|162176024|gb|FC351025.1|FC351025
genomic: CAACGCATGGCAAGCAATGTGCTGGCCAGGGGGTGGAGGATGTCTGAGAGgtgcttatta ... ggcattgcagGATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGC
EST: GGAGGATGTCTGAGAG GATGCACATTTNGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGCEST: gi|162198830|gb|FC374313.1|FC374313
genomic: GGAGGATGTCTGAGAGgtgcttatta ... ggcattgcagGATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGC
EST: CAACGCATGGCAAGCAATGTGCTGGCCAGGGGGTGGAGGATGTCTGAGAG GATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGC
genomic: CAACGCATGGCAAGCAATGTGCTGGCCAGGGGGTGGAGGATGTCTGAGAGgtgcttatta ... ggcattgcagGATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGC
cgacgtttatctcttctacattcgcgaacacttctgacgatatgcggcattgcagGATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGCATACGATTTTTACTTCCAGGGCAAGAACCATTTCTACGTGTATCTGTTT
ttctgac putative branch site (score: 28)
tttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttattattcatgtttataacaatttgtctaaattcttgagtttgctctcgtagatttgactccgttctctagctaatatctgatgcatttaggtttggcgacgtttatctcttctacattcgcgaacacttctgacgatatgcggcattgcagGATGCACATTTTGGAGTTGTGGACAGGAGGCTTCCTGATGTTCTGCGCAGCATACGATTTTTACTTCCAGGGCAAGAACCATTTCTACGTGTATCTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC