1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggttaaaaggaaccattgtgcacctcatttgtaaggtgtcttatatgttttgtgttttctttatggtcagaagtattaacacacatatttttcatgacagTCCACCTGCAATTGAGCGGCTATCAGGAGGCCTGTTCCAGGAGGTGATATGCACCAATACCATCCCTGTGAAGGAAAGCAACTACTTTCCACAGCTGACT
species | Physcomitrella patens |
transcript | PP1S212_43V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGAAGGAGCTCGAGAGGTGTATGCTTGCTGCACTCATGCAGTCTTTAG TCCACCTGCAATTGAGCGGCTATCAGGAGGCCTGTTCCAGGAGGTGATATGEST: gi|67720655|gb|BJ970914.1|BJ970914
genomic: CAGAAGGAGCTCGAGAGGTGTATGCTTGCTGCACTCATGCAGTCTTTAGgtgagtttct ... ttcatgacagTCCACCTGCAATTGAGCGGCTATCAGGAGGCCTGTTCCAGGAGGTGATATG
EST: GCAGAAGGAGCTCGAGAGGTGTATGCTTGCTGCACTCATGCAGTCTTTAG TCCACCTGCAATTGAGCGGCTATCAGGAGGCCTGTTCCAGGAGGTGATATG
genomic: GCAGAAGGAGCTCGAGAGGTGTATGCTTGCTGCACTCATGCAGTCTTTAGgtgagtttct ... ttcatgacagTCCACCTGCAATTGAGCGGCTATCAGGAGGCCTGTTCCAGGAGGTGATATG
tgttttgtgttttctttatggtcagaagtattaacacacatatttttcatgacagTCCACCTGCAATTGAGCGGCTATCAGGAGGCCTGTTCCAGGAGGTGATATGCACCAATACCATCCCTGTGAAGGAAAGCAACTACTTTCCACAGCTGACT
tattaac putative branch site (score: 1)
tatttttc putative PPT
atatttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttaaaaggaaccattgtgcacctcatttgtaaggtgtcttatatgttttgtgttttctttatggtcagaagtattaacacacatatttttcatgacagTCCACCTGCAATTGAGCGGCTATCAGGAGGCCTGTTCCAGGAGGTGATATGCACCAATACCATCCCTGTGAAGGAAAGCAACTACTTTCCACAGCTGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA