1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtactagtttcacacggtattgcgtacattaagaaagtagtgatcggttgcaatgtgttagaaatgttgtggacagtgactactgccattgattgtcgcgacggtgtttttcgttgggtggttgggtgattcgtctaacgttacattccggcatgtagGTCAATTTAAGGCTATCAACGACGAGGGTATGCCACAGTATCAGAGACCTTTCATGAAGGGTAAATTGTATTTGCACTTTACGGTGGAGTTCCCTGAGTC
species | Physcomitrella patens |
transcript | PP1S174_37V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGGAAGACAGCTACTGATCAAGACAAATCCTGGAGAAATCGTAAAACCAG GTCAATTTA-GGCTATCAACGAEST: gi|162161591|gb|FC338798.1|FC338798
genomic: CGGAAGACAGCTACTGATCAAGACAAATCCTGGAGAAATCGTAAAACCAGgtactagttt ... cggcatgtagGTCAATTTAAGGCTATCAACGA
EST: CGGAAGACAGCTACTGATCAAGACAAATCCTGGAGAAATCGTAAAACCAG GTCAATTTAAGGCTATCAACGACGAGGGTATGCCACAGTATCAGAGACCTTEST: gi|100441389|gb|BY962678.1|BY962678
genomic: CGGAAGACAGCTACTGATCAAGACAAATCCTGGAGAAATCGTAAAACCAGgtactagttt ... cggcatgtagGTCAATTTAAGGCTATCAACGACGAGGGTATGCCACAGTATCAGAGACCTT
EST: CGGAAGACAGCTACTGATCAAGACAAATCCTGGAGAAATCGTAAAACCAG GTCAATTTAAGGCTATCAACGACGAGGGTATGCCACAGTATCAGAGACCTTEST: gi|161979173|gb|EE296304.1|EE296304
genomic: CGGAAGACAGCTACTGATCAAGACAAATCCTGGAGAAATCGTAAAACCAGgtactagttt ... cggcatgtagGTCAATTTAAGGCTATCAACGACGAGGGTATGCCACAGTATCAGAGACCTT
EST: GGAAGACAGCTACTGATCAAGACAAATCCTGGNAGAAATCGTAAAACCAG GTCAATTTAAGGCTATCAACGACNAGGGTATGCCACAGTATCAGAGACCTTEST: gi|162234220|gb|FC409758.1|FC409758
genomic: GGAAGACAGCTACTGATCAAGACAAATCCTGG-AGAAATCGTAAAACCAGgtactagttt ... cggcatgtagGTCAATTTAAGGCTATCAACGACGAGGGTATGCCACAGTATCAGAGACCTT
EST: CGGAAGACAGCTACTGATCAAGACAAATCCTGGAGAAATCGTAAAACCAG GTCAATTTAAGGCTATCAACGACGAGGGTATGCCACAGTATCAGAGACCTTEST: gi|162161590|gb|FC338797.1|FC338797
genomic: CGGAAGACAGCTACTGATCAAGACAAATCCTGGAGAAATCGTAAAACCAGgtactagttt ... cggcatgtagGTCAATTTAAGGCTATCAACGACGAGGGTATGCCACAGTATCAGAGACCTT
EST: CGGAAGACAGCTACTGATCAAGACAAATCCTGGAGAAATCGTAAAACCAG GTCAATTTAAGGCTATCAACGACGAGGGTATGCCACAGTATCAGAGACCTT
genomic: CGGAAGACAGCTACTGATCAAGACAAATCCTGGAGAAATCGTAAAACCAGgtactagttt ... cggcatgtagGTCAATTTAAGGCTATCAACGACGAGGGTATGCCACAGTATCAGAGACCTT
gtgtttttcgttgggtggttgggtgattcgtctaacgttacattccggcatgtagGTCAATTTAAGGCTATCAACGACGAGGGTATGCCACAGTATCAGAGACCTTTCATGAAGGGTAAATTGTATTTGCACTTTACGGTGGAGTTCCCTGAGTC
gtctaac putative branch site (score: 124)
ttacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactagtttcacacggtattgcgtacattaagaaagtagtgatcggttgcaatgtgttagaaatgttgtggacagtgactactgccattgattgtcgcgacggtgtttttcgttgggtggttgggtgattcgtctaacgttacattccggcatgtagGTCAATTTAAGGCTATCAACGACGAGGGTATGCCACAGTATCAGAGACCTTTCATGAAGGGTAAATTGTATTTGCACTTTACGGTGGAGTTCCCTGAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG