1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtataattgactcaccgacatatcctgtttgtacttatgttcgaacgccttaggtcttgaagttgaacgatgatcttattgacggcaatgtcatgtagtcattaagtaagattgttattgaacttcttttaattttgtggactttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG
species | Physcomitrella patens |
transcript | PP1S160_44V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCA- GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTEST: gi|67718754|gb|BJ969013.1|BJ969013
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
EST: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAA GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTEST: gi|162258773|gb|FC434572.1|FC434572
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
EST: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAA GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTEST: gi|100445895|gb|CJ970194.1|CJ970194
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
EST: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAA GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTEST: gi|100421800|gb|BY993649.1|BY993649
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
EST: TGGCTGCTGAGCTTTGCGCAGACNATCATAGTGTTTCCCGAGAAGCCCAA GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTEST: gi|208389079|gb|DC937412.1|DC937412
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
EST: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAA GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTEST: gi|162177571|gb|FC352429.1|FC352429
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
EST: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAA GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTEST: gi|100364678|gb|BY947854.1|BY947854
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
EST: TGGCTGCTGAGCTTTGCGCAGACNATCATAGTGTTTCCCGAGAAGCCCNA GATGATTACGCTATACAGAGCTATGAGAAEST: gi|208390080|gb|DC942381.1|DC942381
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAA
EST: TGGCTGCTGAGCTTTGCGCAAACAATCATAGTGTTTCCCGAGAAGCCCAA GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTEST: gi|162156306|gb|FC332330.1|FC332330
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
EST: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAA GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTEST: gi|208391223|gb|DC933512.1|DC933512
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
EST: TGGCTGCTGANCTTTGCGCAGACAATCATAGTGTTTCCCGAGAA-CCCAA GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGEST: gi|40781593|gb|AJ583523.1|AJ583523
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCG
EST: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAA GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTEST: gi|208362110|gb|DC943523.1|DC943523
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
EST: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAA GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTEST: gi|208367731|gb|DC940202.1|DC940202
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
EST: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAA GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGNCAA-CAACAGTEST: gi|208369407|gb|DC936096.1|DC936096
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
EST: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAA GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTEST: gi|162166659|gb|FC343551.1|FC343551
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
EST: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAA GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTEST: gi|19782978|gb|BQ039945.1|BQ039945
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
EST: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAA GATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTEST: gi|208358809|gb|DC935195.1|DC935195
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
EST: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAA GATGATTACCCTATACAGAGCTATGAAAAGGCTATNGCGGCAA-CA-CAGT
genomic: TGGCTGCTGAGCTTTGCGCAGACAATCATAGTGTTTCCCGAGAAGCCCAAgtataattga ... ctttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGT
agtcattaagtaagattgttattgaacttcttttaattttgtggactttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG
ttttaat putative branch site (score: 3)
ctttcttc putative PPT
ttattgaacttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataattgactcaccgacatatcctgtttgtacttatgttcgaacgccttaggtcttgaagttgaacgatgatcttattgacggcaatgtcatgtagtcattaagtaagattgttattgaacttcttttaattttgtggactttcttcagGATGATTACGCTATACAGAGCTATGAGAAGGCTATTGCGGCAAACAACAGTGGTCTCTTCAAGTGGGAGATTGTGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT