1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttaggcgtgttccttatcctgatttttgttgataaattgttttattttctgctcttttatttaggaaagttggtgttgtattgttaattcaggaaatgcactacgcaatcgggcaggacgtttgttttactaacatgacaagttgagctttgcagACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTCTCCGGATTGGGAGCTGGCTTTATTGCTGTTTGCGTTGGCTCTCCTGTTG
species | Physcomitrella patens |
transcript | PP1S15_443V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAG ACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTCEST: gi|208396055|gb|DC924521.1|DC924521
genomic: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAGgttaggcgtg ... agctttgcagACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTC
EST: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAG ACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTCEST: gi|100358857|gb|BY946723.1|BY946723
genomic: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAGgttaggcgtg ... agctttgcagACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTC
EST: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAG ACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTCEST: gi|162262932|gb|FC439299.1|FC439299
genomic: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAGgttaggcgtg ... agctttgcagACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTC
EST: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAG ACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTCEST: gi|162268960|gb|FC445764.1|FC445764
genomic: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAGgttaggcgtg ... agctttgcagACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTC
EST: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAG ACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTCEST: gi|37833787|gb|BJ591799.1|BJ591799
genomic: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAGgttaggcgtg ... agctttgcagACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTC
EST: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAG ACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTCEST: gi|162262931|gb|FC439298.1|FC439298
genomic: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAGgttaggcgtg ... agctttgcagACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTC
EST: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAG ACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTCEST: gi|162268961|gb|FC445765.1|FC445765
genomic: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAGgttaggcgtg ... agctttgcagACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTC
EST: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAG ACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTC
genomic: ACGCTATCATCAATGCTGCGGAGTTGGCCAGTTATGACCAAGTCAAGCAGgttaggcgtg ... agctttgcagACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTC
ctacgcaatcgggcaggacgtttgttttactaacatgacaagttgagctttgcagACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTCTCCGGATTGGGAGCTGGCTTTATTGCTGTTTGCGTTGGCTCTCCTGTTG
tactaac putative branch site (score: 8)
tttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaggcgtgttccttatcctgatttttgttgataaattgttttattttctgctcttttatttaggaaagttggtgttgtattgttaattcaggaaatgcactacgcaatcgggcaggacgtttgttttactaacatgacaagttgagctttgcagACATTGTTAAAGCTCCCTGGCTTTACAGACAACGTTGTTACGCACATCCTCTCCGGATTGGGAGCTGGCTTTATTGCTGTTTGCGTTGGCTCTCCTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT