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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggttgtcttcccgcagcacttacactacgaagcgcattctagctcaaattatattgtagccatcgatggttgatctagtggcctcctcagatacttcggtttctaaattgttccatctattccctcagGTCAAAGAAATTGGCGCATCAATGTTAGAATTGTGGAGCTTGATGGACACCCCAGTTCACGATCAGCAAATGTTCGCGCACATCACATGCAACATTGCCG

Basic information

species Physcomitrella patens
transcript PP1S153_95V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162159868|gb|FC335913.1|FC335913
EST:     AGAAAACCATTCAGTCTTTGGAAGCTGAAAAGCATGAACGGGTTATGAAG                         GTCAAAGAAATTGGCGCATCAATGTTAGAATTGTGGAGCTTGATGGACACC
genomic: AGAAAACCATTCAGTCTTTGGAAGCTGAAAAGCATGAACGGGTTATGAAGgtggttgtct ... attccctcagGTCAAAGAAATTGGCGCATCAATGTTAGAATTGTGGAGCTTGATGGACACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctagtggcctcctcagatacttcggtttctaaattgttccatctattccctcagGTCAAAGAAATTGGCGCATCAATGTTAGAATTGTGGAGCTTGATGGACACCCCAGTTCACGATCAGCAAATGTTCGCGCACATCACATGCAACATTGCCG
                           ttctaaa  putative branch site (score: 2)
                                     ttccatctattccctc  putative PPT
                          tttctaaatt  TA-rich tract