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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgatgttgaggttattattgtgtatctgattcgtttccttgcaacatcctgtcacaaacagtgccatagctgcttaatcctgttcctctgaatggcagCTCATCGGAACTCCTGAAGATAGGGATCTTGGGTTTTTGAGAAGCGACAATGCTAGGCGGTATATCAAGCACCTGCCTCGACAGTCGCCTATTCCCTTAA

Basic information

species Physcomitrella patens
transcript PP1S149_39V6.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22133027|gb|BQ827504.1|BQ827504
EST:     CGTTGTTCCCTGGGAGAGACTATGTGCATCAGCTCCGCCTAATTACAGAA                         CTCATCGGAACTCCTGAAGATAGGGATCTTGGGTTTTTG
genomic: CGTTGTTCCCTGGGAGAGACTATGTGCATCAGCTCCGCCTAATTACAGAAgtaagcacgg ... tgaatggcagCTCATCGGAACTCCTGAAGATAGGGATCTTGGGTTTTTG
EST: gi|162154101|gb|FC330544.1|FC330544
EST:     CGTTGTTCCCTGGGAGAGACTATGTGCATCAGCTCCGCCTAATTACAGAA                         CTCATCGGAACTCCTGAAGATAGGGATCTTGGGTTTTTGAGAAGCGACAAT
genomic: CGTTGTTCCCTGGGAGAGACTATGTGCATCAGCTCCGCCTAATTACAGAAgtaagcacgg ... tgaatggcagCTCATCGGAACTCCTGAAGATAGGGATCTTGGGTTTTTGAGAAGCGACAAT
EST: gi|162205186|gb|FC381284.1|FC381284
EST:     CGTTGTTCCCTGGGAGAGACTATGTGCATCAGCTCCGCCTAATTACAGAA                         CTCATCGGAACTCCTGAAGATAGGGATCTTGGGTTTTTGAGAAGCGACAAT
genomic: CGTTGTTCCCTGGGAGAGACTATGTGCATCAGCTCCGCCTAATTACAGAAgtaagcacgg ... tgaatggcagCTCATCGGAACTCCTGAAGATAGGGATCTTGGGTTTTTGAGAAGCGACAAT
EST: gi|67508267|gb|BJ941136.1|BJ941136
EST:     CGTTGTTCCCTGGGAGAGACTATGTGCATCAGCTCCGCCTAATTACAGAA                         CTCATCGGAACTCCTGAAGATAGGGATCTTGGGTTTTTGAGAAGCGACAAT
genomic: CGTTGTTCCCTGGGAGAGACTATGTGCATCAGCTCCGCCTAATTACAGAAgtaagcacgg ... tgaatggcagCTCATCGGAACTCCTGAAGATAGGGATCTTGGGTTTTTGAGAAGCGACAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatcctgtcacaaacagtgccatagctgcttaatcctgttcctctgaatggcagCTCATCGGAACTCCTGAAGATAGGGATCTTGGGTTTTTGAGAAGCGACAATGCTAGGCGGTATATCAAGCACCTGCCTCGACAGTCGCCTATTCCCTTAA
                            gcttaat  putative branch site (score: 4)
                                  tcctgttcctct  CT-rich tract
                              ttaat  TA-rich tract