Sequence
atgc intronic sequence ATGC exonic sequence...ctagtagtcctaccatctactccatttgtagagttaactgttctgtatggtccatgatgaatttgctaagttgaatgtaatgtgttcatattgtgcgtagGAGGACTTTAGGCCTATTTTAAGAGAATTGCTGTTGACGCATCGCGGTTTGGAATTTCTTCATGATACCCCAGAGTTTCAAGACAGATATG
Basic information
species | Physcomitrella patens |
transcript | PP1S147_62V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S147_62V6.2 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ32791 (Selaginella moellendorffii), 3'ss of exon 5
ctagtagtcctaccatctactccatttgtagagttaactgttctgtatggtccatgatgaatttgctaagttgaatgtaatgtgttcatattgtgcgtagGAGGACTTTAGGCCTATTTTAAGAGAATTGCTGTTGACGCATCGCGGTTTGGAATTTCTTCATGATACCCCAGAGTTTCAAGACAGATATG
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--------------------------------------------gtaactttagcagccgatattct----tgaaagcataat-tgtatcgtatctccagGAGGATTTCAAACCAATCTTGAAGGAGCTTTTGATGACTCACCGCGGTTTGGAATTTCTTCATGACACTCCTGAGTTTCAAGAAAGATATG
upper sequence: PP1S147_62V6.2 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ20642 (Selaginella moellendorffii), 3'ss of exon 5
ctagtagtcctaccatctactccatttgtagagttaactgttctgtatggtccatgatgaatttgctaagttgaatgtaatgtgttcatattgtgcgtagGAGGACTTTAGGCCTATTTTAAGAGAATTGCTGTTGACGCATCGCGGTTTGGAATTTCTTCATGATACCCCAGAGTTTCAAGACAGATATG
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--------------------------------------------gtaactttagcagccgatatcct----tgaaagcataat-tgtatcgtatctccagGAGGATTTCAAACCAATCTTGAAGGAGCTTTTGATGACTCACCGCGGTTTGGAATTTCTTCATGACACTCCTGAGTTTCAAGAAAGATATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162193203|gb|FC369963.1|FC369963EST: CTCGCATTTTTACTATTTTGAAGCAAACTGACAAGAATTTCCTCAGACAG GAGGACTTTAGGCCTATTTTAAGAGAATTGCTGTTGACGCATCGCGGTTTG
genomic: CTCGCATTTTTACTATTTTGAAGCAAACTGACAAGAATTTCCTCAGACAGgtttgtctga ... ttgtgcgtagGAGGACTTTAGGCCTATTTTAAGAGAATTGCTGTTGACGCATCGCGGTTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatggtccatgatgaatttgctaagttgaatgtaatgtgttcatattgtgcgtagGAGGACTTTAGGCCTATTTTAAGAGAATTGCTGTTGACGCATCGCGGTTTGGAATTTCTTCATGATACCCCAGAGTTTCAAGACAGATATG
atgaattt TA-rich tract