1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tggaaaaatattttgagagagaaggctgtggctctctcgtccatatgtggtgcgctgtattacccggatggccttttccggctcgttgcgtccgtcacagGTTGTCGCTGAGCGTGAAACGAAAATACAAAATGAGGTGAAAGAGATTCATCGCGTCTTTTATTGCGAACTCTGCAACAAGCAGTATAAGCTGGCTACCG
species | Physcomitrella patens |
transcript | PP1S9_212V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACTTGACGTGGAAGTGGAAGAAACAGAGGAACTGGCTAAGAAACGTGAG GTTGTCGCTGAGCGTGAAACGAAAATACAAAATGAGGTGAAAGAGATTCATEST: gi|37838432|gb|BJ596440.1|BJ596440
genomic: AACTTGACGTGGAAGTGGAAGAAACAGAGGAACTGGCTAAGAAACGTGAGgtgtgtatca ... tccgtcacagGTTGTCGCTGAGCGTGAAACGAAAATACAAAATGAGGTGAAAGAGATTCAT
EST: AACTTGACGTGGAAGTGGAAGAAACAGAGGAACTGGCTAAGAAACGTGAG GTTGTCGCTGAGCGTGAAACGAAAATACAAAATGAGGTGAAAGAGATTCATEST: gi|162267094|gb|FC443325.1|FC443325
genomic: AACTTGACGTGGAAGTGGAAGAAACAGAGGAACTGGCTAAGAAACGTGAGgtgtgtatca ... tccgtcacagGTTGTCGCTGAGCGTGAAACGAAAATACAAAATGAGGTGAAAGAGATTCAT
EST: GAACTGGCTAAGAAACGTGAG GTTGTCGCTGAGCGTGAAACGAAAATACAAAATGAGGTGAAAGAGATTCATEST: gi|67697114|gb|BJ957347.1|BJ957347
genomic: GAACTGGCTAAGAAACGTGAGgtgtgtatca ... tccgtcacagGTTGTCGCTGAGCGTGAAACGAAAATACAAAATGAGGTGAAAGAGATTCAT
EST: AACTTGACGTGGAAGTGGAAGAAACAGAGGAACTGGCTAAGAAACGTGAG GTTGTCGCTGAGCGTGAAACGAAAATACAAAATGAGGTGAAAGAGATTCATEST: gi|37846217|gb|BJ604225.1|BJ604225
genomic: AACTTGACGTGGAAGTGGAAGAAACAGAGGAACTGGCTAAGAAACGTGAGgtgtgtatca ... tccgtcacagGTTGTCGCTGAGCGTGAAACGAAAATACAAAATGAGGTGAAAGAGATTCAT
EST: AACTTGACGTGGAAGTGGAAGAAACAGAGGAACTGGCTAAGAAACGTGAG GTTGTCGCTGAGCGTGAAACGAAAATACAAAATGAGGTGAAAGAGATTCAT
genomic: AACTTGACGTGGAAGTGGAAGAAACAGAGGAACTGGCTAAGAAACGTGAGgtgtgtatca ... tccgtcacagGTTGTCGCTGAGCGTGAAACGAAAATACAAAATGAGGTGAAAGAGATTCAT
tgtggtgcgctgtattacccggatggccttttccggctcgttgcgtccgtcacagGTTGTCGCTGAGCGTGAAACGAAAATACAAAATGAGGTGAAAGAGATTCATCGCGTCTTTTATTGCGAACTCTGCAACAAGCAGTATAAGCTGGCTACCG
tgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaaaaatattttgagagagaaggctgtggctctctcgtccatatgtggtgcgctgtattacccggatggccttttccggctcgttgcgtccgtcacagGTTGTCGCTGAGCGTGAAACGAAAATACAAAATGAGGTGAAAGAGATTCATCGCGTCTTTTATTGCGAACTCTGCAACAAGCAGTATAAGCTGGCTACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG