1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggcttgtggctgatgtttcagggcaactccagggagtggatgtcataatttgacttgaaactgactatagtgcaattttgaatgatttttctatgtgcagTGTACCTTTCTGCTTGCTGGTGACGATATTCTTTGGCCTAGCAGTGTCACAAGATCTGCTGCCTTTATGGATTTTGGGACCATTGATTACTGGCATTGTG
species | Physcomitrella patens |
transcript | PP1S79_272V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATGGTGGCAGACATCCGATCCCTGGATTAAGTGGCCTATGGCTATTTT -GTACCTTTCTGCTGGCTGEST: gi|162265318|gb|FC440436.1|FC440436
genomic: AGATGGTGGCAGACATCCGATCCCTGGATTAAGTGGCCTATTGCTATTTTgtacgtacac ... ctatgtgcagTGTACCTTTCTGCTTGCTG
EST: AGATGGTGGCAGACATCCGATCCCTGGATTAAGTGGCCTATTGCTATTTT TGTACCTTTCTGCTTGCTGGTGACGATATTCTTTGGCCTAGCAGTGTCACAEST: gi|162219590|gb|FC395586.1|FC395586
genomic: AGATGGTGGCAGACATCCGATCCCTGGATTAAGTGGCCTATTGCTATTTTgtacgtacac ... ctatgtgcagTGTACCTTTCTGCTTGCTGGTGACGATATTCTTTGGCCTAGCAGTGTCACA
EST: AGATGGTGGCAGACATCCGATCCCTGGATTAAGTGGCCTATTGCTATTTT TGTACCTTTCTGCTTGCTGGTGACGATATTCTTTGGCCTAGCAGTGTCACAEST: gi|208382518|gb|DC923174.1|DC923174
genomic: AGATGGTGGCAGACATCCGATCCCTGGATTAAGTGGCCTATTGCTATTTTgtacgtacac ... ctatgtgcagTGTACCTTTCTGCTTGCTGGTGACGATATTCTTTGGCCTAGCAGTGTCACA
EST: AGATGGTGGCAGACATCCGATCCCTGGATTAAGTGGCCTATTGCTATTTT TGTACCTTTCTGCTTGCTGGTGACGATATTCTTTGGCCTAGCAGTGTCACA
genomic: AGATGGTGGCAGACATCCGATCCCTGGATTAAGTGGCCTATTGCTATTTTgtacgtacac ... ctatgtgcagTGTACCTTTCTGCTTGCTGGTGACGATATTCTTTGGCCTAGCAGTGTCACA
taatttgacttgaaactgactatagtgcaattttgaatgatttttctatgtgcagTGTACCTTTCTGCTTGCTGGTGACGATATTCTTTGGCCTAGCAGTGTCACAAGATCTGCTGCCTTTATGGATTTTGGGACCATTGATTACTGGCATTGTG
aactgac putative branch site (score: 4)
tttttctat putative PPT
aattttgaatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcttgtggctgatgtttcagggcaactccagggagtggatgtcataatttgacttgaaactgactatagtgcaattttgaatgatttttctatgtgcagTGTACCTTTCTGCTTGCTGGTGACGATATTCTTTGGCCTAGCAGTGTCACAAGATCTGCTGCCTTTATGGATTTTGGGACCATTGATTACTGGCATTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC