1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taacattgttcactatgtatgcgaatgtggctatagtctgacacatgagctagttgggtgtgtctgctgatattgttggtaaaatcatggtttatttcagATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAG
species | Physcomitrella patens |
transcript | PP1S79_128V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATNGGAGCTATTTTAG ATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGAEST: gi|100394861|gb|BY989962.1|BY989962
genomic: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAGgtgtgttcag ... tttatttcagATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGA
EST: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAG ATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGAEST: gi|18331434|gb|BJ163445.1|BJ163445
genomic: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAGgtgtgttcag ... tttatttcagATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGA
EST: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAG ATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGAEST: gi|100396641|gb|BY990226.1|BY990226
genomic: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAGgtgtgttcag ... tttatttcagATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGA
EST: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAG ATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGAEST: gi|100383576|gb|BY950360.1|BY950360
genomic: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAGgtgtgttcag ... tttatttcagATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGA
EST: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAG ATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGAEST: gi|100369727|gb|BY967362.1|BY967362
genomic: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAGgtgtgttcag ... tttatttcagATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGA
EST: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAG ATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGAEST: gi|100383471|gb|BY950255.1|BY950255
genomic: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAGgtgtgttcag ... tttatttcagATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGA
EST: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAG ATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGAEST: gi|100382602|gb|BY986877.1|BY986877
genomic: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAGgtgtgttcag ... tttatttcagATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGA
EST: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAG ATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGAEST: gi|208371635|gb|DC932464.1|DC932464
genomic: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAGgtgtgttcag ... tttatttcagATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGA
EST: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAG ATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGAEST: gi|100371539|gb|BY968029.1|BY968029
genomic: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAGgtgtgttcag ... tttatttcagATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGA
EST: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATGGGAGCTATTTTAG ATCANGGGC-ACTGTGGATCATGCTGGGCTTTTGGAGCAGCGEST: gi|18352613|gb|BJ184667.1|BJ184667
genomic: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAGgtgtgttcag ... tttatttcagATCA-GGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCG
EST: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAG ATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGA
genomic: TGACGCTCGTAAACACTGGGGTCATTGTTCGACTATTGGAGCTATTTTAGgtgtgttcag ... tttatttcagATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGA
tgagctagttgggtgtgtctgctgatattgttggtaaaatcatggtttatttcagATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAG
tgctgat putative branch site (score: 7)
tttatttc putative PPT
taaaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacattgttcactatgtatgcgaatgtggctatagtctgacacatgagctagttgggtgtgtctgctgatattgttggtaaaatcatggtttatttcagATCAGGGCCACTGTGGATCATGCTGGGCTTTTGGAGCAGCGGAATCATTGACTGATCGCTTCTGCATTCACATGAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - -cacatga